Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5 145 9e-30
seq9 118 1e-21
seq44 98.7 1e-15
>seq5
Length=873697
Score = 145 bits (160), Expect = 9e-30
Identities = 148/193 (77%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|| || || ||||||| ||| |||||| |||||||||||||||||||| || || |
Sbjct 39134 CGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCA 39193
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| |||||||||||||| || | ||| | || |||||||
Sbjct 39194 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTG 39253
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||| | | | | || ||| ||| || || || | ||||||
Sbjct 39254 TCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGATA 39313
Query 46559 GTTTTGCCCGTCA 46571
|||||||| ||||
Sbjct 39314 GTTTTGCCGGTCA 39326
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| ||| |||||| || || |||||||| || || || | |
Sbjct 38677 ACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACC 38736
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||| || || ||||| || | ||||||||||| | || | || ||||||
Sbjct 38737 GTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTT 38796
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||||| |||| | | | || ||||||||||| || |||| |||||
Sbjct 38797 GTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACCTCCAAGGTGAT 38856
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || || ||||| |||||
Sbjct 38857 GGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
Score = 113 bits (124), Expect = 5e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| | || || | || ||||||||||||||||||||
Sbjct 39441 CTCCTTCTGGATGTTGTAATCGGACAAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 39500
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||||||||||||| |||| || | || ||||||||| |||||| |||| | |||
Sbjct 39501 GATCAAGCGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTTA-CGT 39559
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| ||| ||||| || | ||||| || || || ||
Sbjct 39560 TGTCGATCGTGTCTGACGACTCCACCTCGAGGGTGATAGTCTTACCGGT 39608
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || ||||||||||| || ||||| ||| | || || | ||||||||| |||||
Sbjct 38930 TCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAA 38989
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | || ||||| || | || | | |||||| ||| |||||| ||||| |||
Sbjct 38990 ATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTGA-CGTT 39048
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || || ||||| || | ||| ||||| ||||| |||| || || ||
Sbjct 39049 GTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGAC 39108
Query 46582 AAAGATTTGCAT 46593
|| || |||||
Sbjct 39109 GAAAATCTGCAT 39120
>seq9
Length=754770
Score = 118 bits (130), Expect = 1e-21
Identities = 95/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 276183 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 276242
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||||||||| | || | || |||||||||| |||||| |||||
Sbjct 276243 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 276297
>seq44
Length=299893
Score = 98.7 bits (108), Expect = 1e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 198037 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 197978
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | ||||||||||| | || | || |||||||||
Sbjct 197977 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 197939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236605368080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |