Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5 143 6e-29 seq44 104 5e-17 seq9 86.0 1e-11 >seq5 Length=873697 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || ||||||||||| || | ||||| | ||||||||| | ||| Sbjct 38917 GTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCTTCTAACTG 38976 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || ||||| || |||||||| || || || || || ||||| || Sbjct 38977 CTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCCTGAATCTT 39036 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||| ||||| ||||| || || |||| ||||| || || Sbjct 39037 CGACTTGACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTCTTGCCAGT 39096 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 39097 CAATGTCTTGACGAAAATCTGCAT 39120 Score = 125 bits (138), Expect = 2e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| |||||||| ||||| || || || |||||||||| |||| || | ||||| || Sbjct 39424 ACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAG-GTACGGCCATCCTC 39482 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| | || || || || || ||||||||||| ||||| || Sbjct 39483 GAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 39542 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| || || ||||| || ||||| || ||||| | ||||| Sbjct 39543 GATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGGGTGATAGTCTT 39602 Query 195111 TCCTGT 195116 || || Sbjct 39603 ACCGGT 39608 Score = 122 bits (134), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || ||||| ||||| || | || || || || ||||| ||||| Sbjct 38689 GTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCAGCTG 38748 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| ||||||||||| || || ||||| || |||||||| || |||||||| || || Sbjct 38749 TTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTT 38808 Query 195057 TTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||||| || ||||| || ||| ||| || || | ||| | ||||| || Sbjct 38809 CGATTTGACGTTATCGATGGTATCGCTCGA---TTCAACCTCCAAGGTGATGGTCTTGCC 38865 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| || ||||| | ||||| Sbjct 38866 GGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || || ||||| ||||| || || |||||||| |||| || || | ||||| Sbjct 39137 AAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCATCC 39196 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||||||||| || |||||||| | || || || ||||| |||||||| || ||||| Sbjct 39197 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCC 39256 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 ||||| || ||| || || |||||||| || || || || ||||| || | || Sbjct 39257 TGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGATAGTT 39316 Query 195109 TTTCCTGTCA 195118 || || |||| Sbjct 39317 TTGCCGGTCA 39326 >seq44 Length=299893 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| |||| || || | ||||| |||||||| Sbjct 198049 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTG 197990 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||||||||| || || ||||| || |||||||| || |||||| ||||| Sbjct 197989 CTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTACAATTTA 197930 Query 195057 TT 195058 || Sbjct 197929 TT 197928 >seq9 Length=754770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || || || || ||||| |||| || || | || || |||||||| Sbjct 276170 GTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 276229 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || || ||||| || |||||||| || ||||| || || || Sbjct 276230 CTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 276289 Query 195057 TTGCTTGACGTTCTC 195071 |||||| || || Sbjct 276290 GGACTTGACATTGTC 276304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477989330818