Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 6e-29
seq44 104 5e-17
seq9 86.0 1e-11
>seq5
Length=873697
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||| || || ||||||||||| || | ||||| | ||||||||| | |||
Sbjct 38917 GTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCTTCTAACTG 38976
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||| || || ||||| || |||||||| || || || || || ||||| ||
Sbjct 38977 CTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCCTGAATCTT 39036
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || ||||| ||||| ||||| || || |||| ||||| || ||
Sbjct 39037 CGACTTGACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTCTTGCCAGT 39096
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| | |||||
Sbjct 39097 CAATGTCTTGACGAAAATCTGCAT 39120
Score = 125 bits (138), Expect = 2e-23
Identities = 141/186 (76%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
||||| |||||||| ||||| || || || |||||||||| |||| || | ||||| ||
Sbjct 39424 ACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAG-GTACGGCCATCCTC 39482
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || |||||||| | || || || || || ||||||||||| ||||| ||
Sbjct 39483 GAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 39542
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||| ||||| || || ||||| || ||||| || ||||| | |||||
Sbjct 39543 GATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGGGTGATAGTCTT 39602
Query 195111 TCCTGT 195116
|| ||
Sbjct 39603 ACCGGT 39608
Score = 122 bits (134), Expect = 2e-22
Identities = 152/207 (73%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || ||||| ||||| || | || || || || ||||| |||||
Sbjct 38689 GTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCAGCTG 38748
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| ||||||||||| || || ||||| || |||||||| || |||||||| || ||
Sbjct 38749 TTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTT 38808
Query 195057 TTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113
|||||||| || ||||| || ||| ||| || || | ||| | ||||| ||
Sbjct 38809 CGATTTGACGTTATCGATGGTATCGCTCGA---TTCAACCTCCAAGGTGATGGTCTTGCC 38865
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||| || ||||| | |||||
Sbjct 38866 GGTGAGAGTCTTCACGAAGATCTGCAT 38892
Score = 118 bits (130), Expect = 2e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988
|| || || || ||||| ||||| || || |||||||| |||| || || | |||||
Sbjct 39137 AAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCATCC 39196
Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
||||||||||| || |||||||| | || || || ||||| |||||||| || |||||
Sbjct 39197 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCC 39256
Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108
||||| || ||| || || |||||||| || || || || ||||| || | ||
Sbjct 39257 TGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGATAGTT 39316
Query 195109 TTTCCTGTCA 195118
|| || ||||
Sbjct 39317 TTGCCGGTCA 39326
>seq44
Length=299893
Score = 104 bits (114), Expect = 5e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || ||||| || || || ||||| |||| || || | ||||| ||||||||
Sbjct 198049 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTG 197990
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||||||||| || || ||||| || |||||||| || |||||| |||||
Sbjct 197989 CTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTACAATTTA 197930
Query 195057 TT 195058
||
Sbjct 197929 TT 197928
>seq9
Length=754770
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || || || || || || ||||| |||| || || | || || ||||||||
Sbjct 276170 GTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 276229
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||| || || || || ||||| || |||||||| || ||||| || || ||
Sbjct 276230 CTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 276289
Query 195057 TTGCTTGACGTTCTC 195071
|||||| || ||
Sbjct 276290 GGACTTGACATTGTC 276304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109477989330818
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |