Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq5 96.9 3e-15
>seq5
Length=873697
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || |||||| || || ||||||||||| || || ||| | ||
Sbjct 38903 AGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGC 38962
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || |||||||| || || || || || || || ||||| | || | ||||||
Sbjct 38963 CCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCC 39022
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || || | | | || || | ||||||||| | ||||
Sbjct 39023 TTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTA 39082
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || ||||| || || || |||||||||||
Sbjct 39083 ATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | || || | |||||| || ||||| ||| || ||||| ||||| |||||
Sbjct 38666 CCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAG 38725
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | |||| |||| ||| ||||| || || || || ||||| || || | |||
Sbjct 38726 AGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGA 38785
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| ||| || | | | | || || || |||
Sbjct 38786 ATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACC 38845
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || || || || || || | ||| || || || ||||||||
Sbjct 38846 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || || || | ||| || || ||| || || |||||||| || ||||| | ||
Sbjct 39131 AGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGG 39190
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| ||||| || |||| ||||| ||||| | |||| |||||||
Sbjct 39191 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCC 39250
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | | || |||| ||| ||||| | |||
Sbjct 39251 TTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTG 39310
Query 48729 ATCGTTTTTCCCGTCA 48744
|| ||||| || ||||
Sbjct 39311 ATAGTTTTGCCGGTCA 39326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380936420760042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |