Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq93 228 2e-54 seq13 138 2e-27 >seq93 Length=73557 Score = 228 bits (252), Expect = 2e-54 Identities = 693/1058 (66%), Gaps = 27/1058 (3%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || ||||| |||||||||||||| |||||| |||||||| |||| ||||| || Sbjct 32893 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATCTGAATGTTGAGTTTCTTAGCCTCCGGT 32834 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| |||| ||||| | ||| | ||||| || || || || || || || Sbjct 32833 GATTCGAATGGCAGGCGCAGAGCAAGGAAGGCATCGGCGAGACCTTGCACACCCATGCCA 32774 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595 || || | ||| | |||| | || | || ||| ||||| || ||||| || Sbjct 32773 ATAGGGCGGTGACGGAAGTTGCTA-CGACGTGCCTCTTCGACGGGGTAGTGATTGACTTC 32715 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | || || || || | || | ||| | | || ||| |||||||||| Sbjct 32714 GATAATCTTATTCAGATTACGCGTCACGACCTGAGTGACTTCGTGCAGCTTCTGG----- 32660 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 || | |||||||| | | || | || || || | || |||| || Sbjct 32659 -AAGTCGAACTCGCCACGCTTGTAG------TCGACGAACGATGGGAGAGCAAGAGAAGC 32607 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || ||| || || || ||||| || ||| |||| |||||||| || || ||||| Sbjct 32606 CAAGTTGCAAACAGCGACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAGGTT 32547 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || |||||| || || | || || || |||||| ||| || |||||||| Sbjct 32546 GGAGCTGCGGATGGTACCGAGATTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTA 32487 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 ||||| || || ||||||||| ||||||| | || || | ||| || | ||| Sbjct 32486 AAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGCT-TCT 32428 Query 221896 GG-CGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAGCATG 221953 || | | ||| ||| || | | | ||||| ||| ||||| | | ||||||| Sbjct 32427 GGGCACGCACTGTC-TCGCGGCCACGGCCCTC---CTTCTCATAGCGGTGATAGAGCTCC 32372 Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 || |||| |||||||| | || | ||||| ||| | | ||| |||||||| || Sbjct 32371 TCGAACTCATCACCGTAGACGTCCGCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTC 32312 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 || | ||| || | || | || ||||||||| || ||||||||||| || | ||| Sbjct 32311 CACTCGCCGTTTTCCTGCACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAGAAG 32252 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 || || | || || ||| ||| ||||| ||| || | || ||||| || |||| Sbjct 32251 AGGTCGCGGGCACGAACCTCTTCCTTGCCGTGGTTCTTACGAAGGTCCAAGAAGCCAAAT 32192 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | ||||||||||||||||| || |||| ||| | ||| || || ||||||||||||||| Sbjct 32191 ACATCAGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCACCTGGACGCTTGTTGCCACCC 32132 Query 222194 TGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 || || | | | ||| | |||| ||| || || | || | || || || || Sbjct 32131 TGGTCGA-CGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGA 32073 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGACATG 222310 | |||||| ||||| |||||| | ||| ||| | | | | | | || | Sbjct 32072 TGTACCGTTTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGA-- 32015 Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370 || ||||| || ||| || ||||||| || || |||| || || || ||| || Sbjct 32014 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCACATGTCTTAAGTGTATCGTAGATTCCA 31955 Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAA 222430 || || ||| ||||| | || | || || || ||||||||||||| | || | Sbjct 31954 TCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATGGGGTA 31895 Query 222431 CAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 | ||||| || || || || |||||||| ||||| Sbjct 31894 CCCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTGAAGTA 31857 >seq13 Length=704243 Score = 138 bits (152), Expect = 2e-27 Identities = 294/446 (66%), Gaps = 9/446 (2%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || || || || || ||||| || ||||| ||||| ||||| ||||| || || ||||| Sbjct 439845 CGTCTTGTCGCGTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCCTCCATC 439904 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||||| ||| || || ||||||||| || ||| |||||||||||||| Sbjct 439905 TTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCG 439964 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC 26058 | |||||||| | |||| ||||| |||||||| |||| | | || || Sbjct 439965 CGTGACGAGGGCATGCACACCGATTTCGCCTGCCTCCTCTTTTC------TCTCCTGAAC 440018 Query 26059 AAACCTTC--TCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | | | | ||| ||| | ||| | ||||||| || ||||| |||||| || Sbjct 440019 ACTCGTCCCAGCAAGGAGTCGGTCCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAG 440078 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 || || | | ||||||||| | |||||| || Sbjct 440079 GAATTCCTGACTGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGC 440138 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC 26235 ||||||||||||| || ||||||| |||||| | || || | ||| | ||| Sbjct 440139 CAATACATTGAGTTCGTTGCCGACCGTCTGCTCTTGGCTCTCGGTAACACCAAGGTGTAC 440198 Query 26236 AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295 | | | | ||||| |||||||| ||||| || || || |||| || |||||||||||| Sbjct 440199 AATGCCACCAACCCCTTCGACTTCATGGAGAATATCTCCTTGGCTGGCAAGACCAACTTC 440258 Query 26296 TTTGAAAAGAGGGTCGGCGACTATCA 26321 || || ||| | || |||||||| || Sbjct 440259 TTCGAGAAGCGCGTTGGCGACTACCA 440284 Score = 102 bits (112), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| || || |||||| ||||||||||||||||| || Sbjct 439394 TGGCAAATGTACAAGAAGGCCGAAGCATCCTTCTGGACAGCCGAAGAGATTGATCTCTCC 439453 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGC---ATTTTCTCAAGTAC 25596 ||||| | ||| |||| || | || || ||||| ||| ||| || || Sbjct 439454 AAGGATCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTTATCTCCCAC 439513 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || || || || ||||| ||||| || || |||||||| || |||| | ||| Sbjct 439514 GTCCTAGCCTTTTTCGCCGCCTCAGATGGCATCGTCAACGAGAACCTAGTCGAGCGCTTC 439573 Query 25657 ACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | ||||| | | ||| ||||| | ||| |||||||| |||||||| Sbjct 439574 TCCGGCGAAGTACAAATAC-CCGAGGCGAGGTGCTTCTACGGCTTCCAGAT 439623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841850917760