Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq93 134 2e-25
seq13 127 2e-23
seq39 122 1e-21
seq20 105 8e-17
>seq93
Length=73557
Score = 134 bits (148), Expect = 2e-25
Identities = 212/301 (70%), Gaps = 2/301 (1%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| |||| ||||||||||| | ||| || || ||
Sbjct 32132 CTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGA 32073
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| | | ||||| ||||| ||| || | |||| || | ||
Sbjct 32072 TGTACCGTTTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGACC 32013
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243
|| ||||| || | ||||||||| | || || ||| || || || |||||||| || |
Sbjct 32012 AATACCGCCAGCGGTCTTGGAGATCAAAGCACA-TGTCTTAAGTGTATCGTAGATTCCAT 31954
Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303
| || ||| |||||||||| | ||| ||||| ||||| | || || | || |
Sbjct 31953 CAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATGGGGTAC 31894
Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363
| |||||||| || || || | || ||||| ||| | |||||||| |||||| |
Sbjct 31893 CCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATG 31834
Query 1630364 T 1630364
|
Sbjct 31833 T 31833
Score = 95.1 bits (104), Expect = 1e-13
Identities = 286/444 (64%), Gaps = 10/444 (2%)
Strand=Plus/Minus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTG 1628220
||| || |||||| ||||||||||||| | | | | ||||| || |||| |||||||
Sbjct 32571 ACTCGATGATCTCAGTGCACAGGTTGGA-GCTGCGGATGGTACCGAGATTCTTCTGGTTG 32513
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| ||| ||||||| |||||| | || || ||||| |||| |||
Sbjct 32512 CTCTTGCGGTTGCAGGCATCCTTGTAAAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCC 32453
Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACG-ACAGTC-CGCG--CGCGGCCCTN 1628336
||| |||||| |||| | || | |||||| || ||| |||| | |||||||
Sbjct 32452 TCGAGGATGGCATACCAAAGCTTCTG----GGCACGCACTGTCTCGCGGCCACGGCCCTC 32397
Query 1628337 NNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGG 1628396
|| || | | |||||| || ||||||||
Sbjct 32396 CTTCTCATAGCGGTGATAGAGCTCCTCGAACTCATCACCGTAGACGTCCGCGAGGCCGGG 32337
Query 1628397 CGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAG 1628456
|||||| || || | |||| ||| ||||| | | | || ||| |||||
Sbjct 32336 AGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTTCATGAAGAG 32277
Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516
|| ||||||| ||||| ||||||||||| || || ||| ||||||||||||||
Sbjct 32276 ATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGTGGTT 32217
Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576
||| ||||| | || | | | || |||||||||||||| |||||| ||| ||
Sbjct 32216 CTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTAGATGGCGAA 32157
Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600
|| || |||||| ||| ||
Sbjct 32156 AGCACCTGGACGCTTGTTGCCACC 32133
>seq13
Length=704243
Score = 127 bits (140), Expect = 2e-23
Identities = 181/254 (71%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| |||| |||| | | |||
Sbjct 439644 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACCTCGCCTCGGGTATTTGT 439585
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || ||| || || | ||||||||| |||||||| || ||||||||||
Sbjct 439584 ACTTCGCCGGAGAAGCGCTCGACTAGGTTCTCGTTGACGATGCCATCTGAGGCGGCGAAA 439525
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || |||||||| ||||||| ||||||||||||| | | || ||||| |
Sbjct 439524 AAGGCTAGGACGTGGGAGATAAAGAAGCGCTCGTCGTCGTTCAATCGCTTGTTCCAGTCG 439465
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | ||| || | ||| ||||| ||||||| || || |||||||| |||
Sbjct 439464 TGGAGATCCTTGGAGAGATCAATCTCTTCGGCTGTCCAGAAGGATGCTTCGGCCTTCTTG 439405
Query 869870 TACATCTCCCATAC 869883
||||| | ||| ||
Sbjct 439404 TACATTTGCCAGAC 439391
Score = 122 bits (134), Expect = 1e-21
Identities = 180/252 (71%), Gaps = 5/252 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| |||||| |||||| |||||||||||||| | | |||||
Sbjct 440290 GCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATA 440231
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||| ||| | ||||| | | |
Sbjct 440230 TTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTACACCTTGGTGTTACCGAGAGCCAAG 440171
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA-- 868868
||||| |||||||| || ||||| ||||| |||||||||||| |||||||||||||
Sbjct 440170 AGCAGACGGTCGGCAACGAACTCAATGTATTGGCACATGAGGGTAGCGTTCATGCCGAGC 440111
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||||| | ||||| | ||| ||| || || | |||||| ||| || || ||
Sbjct 440110 AGAGCGCAA--GGCAGAGCCTCAGTCAGGAATTCCTGCTCGATTGTGACAGCTTCAGTGA 440053
Query 868929 TGATCTGCCTGG 868940
|||| ||||||
Sbjct 440052 TGAT-GGCCTGG 440042
Score = 95.1 bits (104), Expect = 1e-13
Identities = 126/173 (73%), Gaps = 9/173 (5%)
Strand=Plus/Minus
Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260
|||||| |||| ||||||||||||||| ||||||||||| ||||| ||||||| | |
Sbjct 439954 TCGTTGGAGAAGGTGAGGCCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCG 439895
Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320
|| || ||| ||||| ||||||||||| || || ||| || || | ||||||
Sbjct 439894 AAGGAACCACTGAAGAAGATACCCTCGACGGCAGCGAACGCGACAAGACGGTTCGCAAAG 439835
Query 869321 GTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370
||| ||| | ||| | |||||| || |||||||||||||| ||
Sbjct 439834 GTG--GAG----TTCTTATCAGAGATCCATCGCAGAGCCCAGTCGGCCTTCTT 439788
>seq39
Length=354817
Score = 122 bits (134), Expect = 1e-21
Identities = 96/115 (83%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||||||||| ||||||||| | || ||||| | || |||||| | || ||||||
Sbjct 38445 GCTGCCAACTACCTGGACATCAAGGCCCTCCTCGACGTCGGTTGCAAGACGGTCGCCAAC 38504
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| ||||| |||||||| ||||| || |||||| || |||
Sbjct 38505 ATGATCAAGGGCAAGTCCCCCGACGAGATCCGAAAGACGTTCAACATCCAGAACG 38559
>seq20
Length=546136
Score = 105 bits (116), Expect = 8e-17
Identities = 157/220 (71%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 1852034 TCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTG 1852090
||||||||| || ||||||||| | | ||| || ||||| ||||||| || ||
Sbjct 232353 TCGTCGAGGACGTCGATCTTGGAGTCTGGGTCGGAGGAACTCATTTTGCCGC-CTTGG-- 232297
Query 1852091 AGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGG 1852150
||||| || || | ||||| | |||||| ||||| ||||||| ||| ||
Sbjct 232296 AGGCCGGGGACCATTGGGTTCATTAGGTGGGCGCGCTCTTTGTAGCCGATTTTCGGGAGC 232237
Query 1852151 TGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 1852210
||| || | ||| || |||||||||||||| ||||| || || | || |||
Sbjct 232236 ACGTCTTTTGCTAGGGCGAAGATCTTGCGCTGGTCTACGCCGCCGAATTGTACATCTACG 232177
Query 1852211 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
||||||| ||||||||||| || |||||||| |||||||
Sbjct 232176 TCGAGGTATTGCTCGTCGAGCGCTTGCATGAGGGGGTAGA 232137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107118355570518
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |