Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq93 134 2e-25 seq13 127 2e-23 seq39 122 1e-21 seq20 105 8e-17 >seq93 Length=73557 Score = 134 bits (148), Expect = 2e-25 Identities = 212/301 (70%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| |||| ||||||||||| | ||| || || || Sbjct 32132 CTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGA 32073 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | | ||||| ||||| ||| || | |||| || | || Sbjct 32072 TGTACCGTTTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGACC 32013 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 || ||||| || | ||||||||| | || || ||| || || || |||||||| || | Sbjct 32012 AATACCGCCAGCGGTCTTGGAGATCAAAGCACA-TGTCTTAAGTGTATCGTAGATTCCAT 31954 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || ||| |||||||||| | ||| ||||| ||||| | || || | || | Sbjct 31953 CAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATGGGGTAC 31894 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | |||||||| || || || | || ||||| ||| | |||||||| |||||| | Sbjct 31893 CCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATG 31834 Query 1630364 T 1630364 | Sbjct 31833 T 31833 Score = 95.1 bits (104), Expect = 1e-13 Identities = 286/444 (64%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||| ||||||||||||| | | | | ||||| || |||| ||||||| Sbjct 32571 ACTCGATGATCTCAGTGCACAGGTTGGA-GCTGCGGATGGTACCGAGATTCTTCTGGTTG 32513 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| ||| ||||||| |||||| | || || ||||| |||| ||| Sbjct 32512 CTCTTGCGGTTGCAGGCATCCTTGTAAAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCC 32453 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACG-ACAGTC-CGCG--CGCGGCCCTN 1628336 ||| |||||| |||| | || | |||||| || ||| |||| | ||||||| Sbjct 32452 TCGAGGATGGCATACCAAAGCTTCTG----GGCACGCACTGTCTCGCGGCCACGGCCCTC 32397 Query 1628337 NNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGG 1628396 || || | | |||||| || |||||||| Sbjct 32396 CTTCTCATAGCGGTGATAGAGCTCCTCGAACTCATCACCGTAGACGTCCGCGAGGCCGGG 32337 Query 1628397 CGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||||| || || | |||| ||| ||||| | | | || ||| ||||| Sbjct 32336 AGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTTCATGAAGAG 32277 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 || ||||||| ||||| ||||||||||| || || ||| |||||||||||||| Sbjct 32276 ATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGTGGTT 32217 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| ||||| | || | | | || |||||||||||||| |||||| ||| || Sbjct 32216 CTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTAGATGGCGAA 32157 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 || || |||||| ||| || Sbjct 32156 AGCACCTGGACGCTTGTTGCCACC 32133 >seq13 Length=704243 Score = 127 bits (140), Expect = 2e-23 Identities = 181/254 (71%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| |||| |||| | | ||| Sbjct 439644 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACCTCGCCTCGGGTATTTGT 439585 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||| || || | ||||||||| |||||||| || |||||||||| Sbjct 439584 ACTTCGCCGGAGAAGCGCTCGACTAGGTTCTCGTTGACGATGCCATCTGAGGCGGCGAAA 439525 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||||||| ||||||||||||| | | || ||||| | Sbjct 439524 AAGGCTAGGACGTGGGAGATAAAGAAGCGCTCGTCGTCGTTCAATCGCTTGTTCCAGTCG 439465 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | ||| || | ||| ||||| ||||||| || || |||||||| ||| Sbjct 439464 TGGAGATCCTTGGAGAGATCAATCTCTTCGGCTGTCCAGAAGGATGCTTCGGCCTTCTTG 439405 Query 869870 TACATCTCCCATAC 869883 ||||| | ||| || Sbjct 439404 TACATTTGCCAGAC 439391 Score = 122 bits (134), Expect = 1e-21 Identities = 180/252 (71%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| |||||||||||||| | | ||||| Sbjct 440290 GCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATA 440231 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||| ||| | ||||| | | | Sbjct 440230 TTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTACACCTTGGTGTTACCGAGAGCCAAG 440171 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA-- 868868 ||||| |||||||| || ||||| ||||| |||||||||||| ||||||||||||| Sbjct 440170 AGCAGACGGTCGGCAACGAACTCAATGTATTGGCACATGAGGGTAGCGTTCATGCCGAGC 440111 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| | ||||| | ||| ||| || || | |||||| ||| || || || Sbjct 440110 AGAGCGCAA--GGCAGAGCCTCAGTCAGGAATTCCTGCTCGATTGTGACAGCTTCAGTGA 440053 Query 868929 TGATCTGCCTGG 868940 |||| |||||| Sbjct 440052 TGAT-GGCCTGG 440042 Score = 95.1 bits (104), Expect = 1e-13 Identities = 126/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| ||||||||||||||| ||||||||||| ||||| ||||||| | | Sbjct 439954 TCGTTGGAGAAGGTGAGGCCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCG 439895 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || || ||| ||||| ||||||||||| || || ||| || || | |||||| Sbjct 439894 AAGGAACCACTGAAGAAGATACCCTCGACGGCAGCGAACGCGACAAGACGGTTCGCAAAG 439835 Query 869321 GTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 ||| ||| | ||| | |||||| || |||||||||||||| || Sbjct 439834 GTG--GAG----TTCTTATCAGAGATCCATCGCAGAGCCCAGTCGGCCTTCTT 439788 >seq39 Length=354817 Score = 122 bits (134), Expect = 1e-21 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||| ||||||||| | || ||||| | || |||||| | || |||||| Sbjct 38445 GCTGCCAACTACCTGGACATCAAGGCCCTCCTCGACGTCGGTTGCAAGACGGTCGCCAAC 38504 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||| |||||||| ||||| || |||||| || ||| Sbjct 38505 ATGATCAAGGGCAAGTCCCCCGACGAGATCCGAAAGACGTTCAACATCCAGAACG 38559 >seq20 Length=546136 Score = 105 bits (116), Expect = 8e-17 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1852034 TCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTG 1852090 ||||||||| || ||||||||| | | ||| || ||||| ||||||| || || Sbjct 232353 TCGTCGAGGACGTCGATCTTGGAGTCTGGGTCGGAGGAACTCATTTTGCCGC-CTTGG-- 232297 Query 1852091 AGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGG 1852150 ||||| || || | ||||| | |||||| ||||| ||||||| ||| || Sbjct 232296 AGGCCGGGGACCATTGGGTTCATTAGGTGGGCGCGCTCTTTGTAGCCGATTTTCGGGAGC 232237 Query 1852151 TGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 1852210 ||| || | ||| || |||||||||||||| ||||| || || | || ||| Sbjct 232236 ACGTCTTTTGCTAGGGCGAAGATCTTGCGCTGGTCTACGCCGCCGAATTGTACATCTACG 232177 Query 1852211 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 ||||||| ||||||||||| || |||||||| ||||||| Sbjct 232176 TCGAGGTATTGCTCGTCGAGCGCTTGCATGAGGGGGTAGA 232137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107118355570518