Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq93 199 4e-46 seq5 104 2e-17 >seq93 Length=73557 Score = 199 bits (220), Expect = 4e-46 Identities = 978/1530 (64%), Gaps = 50/1530 (3%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 |||||||| ||||| || | |||||||| ||| ||||| |||| | ||||| || Sbjct 33178 ACCTGAAACTCACCAGCGAGGACTCGACGGGAGTAGATGTTTGAGGTGTACGGCTCGAAG 33119 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| || || ||||| | |||| ||| || |||||| || | | || Sbjct 33118 CACTCGTTGTTGCCAAGGATCTGGGAGGTGGACGCAGTGGGCATGGGAGCAATGAGGAGG 33059 Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || || | ||| || ||| ||| ||||| ||||||| ||||||||| | | Sbjct 33058 GAGTTGCGGACACCATGCTGAGCAATCTTC--TCCTTCAGCGACGCCCAGTCCCAGAGGT 33001 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGGGACTG 138741 || |||| | |||||||||||| || || | || || |||| ||| | Sbjct 33000 CGGTAGGCGTGACGTTCCACATATCATATTGGAGGATGCCTTGAGAAACAGGCGAG---- 32945 Query 138742 CCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCA 138801 || ||||| | | ||| || | || | || | ||| | | ||| ||| Sbjct 32944 CCCTCGTATGTCTTATATGGGCCGAGTTCCTTTGCAATGTCGCAGGAAGAGGTGAGAGCA 32885 Query 138802 CCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC-GGCGCTCTCGTA 138860 ||| ||| || || ||| ||||| ||||| ||||| || | | ||| | Sbjct 32884 GCATGGTAGATGGTCTCGAAGATCTGAATGTTGAGTTTCTTAGCCTCCGGTGAT-TCGAA 32826 Query 138861 CGGCATGCG--GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGG 138918 |||| ||| ||||| | || || ||||| || |||||||| |||| || | |||| Sbjct 32825 TGGCAGGCGCAGAGCAAGG--AAGGCATCGGCGAGACCTTGCACACCCATGCCAATAGGG 32768 Query 138919 CGATGGCGCAGATTTG--ACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGA 138976 || || || | | ||| ||| | || |||||| || || | || || ||||| | Sbjct 32767 CGGTGACGGA-AGTTGCTACGACGT-GCCTCTTCGACGGGGTAGTGATTGACTTCGATAA 32710 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTAT 139035 | || || | ||| ||| || |||| ||| | | | | | | | | || ||| | Sbjct 32709 TCTTATTCAGATTACGCGTCACGACCTGAGT-GACTTCGTGCAGCTTCTGGAAGTCGAAC 32651 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 ||| | |||| |||||||| ||| || || | || || || | |||| Sbjct 32650 TCGCCACGCTTGTAGTCGACGAA--CGA------TGG-GAGAGCAAGAGAAGCCAAGTTG 32600 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || || || || || |||| |||| || || | |||| || | Sbjct 32599 CAAACAGCGACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAGGTTGGAGCTG 32540 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||| ||||| | ||| | || ||||| || ||||| || ||||| ||||||||||| Sbjct 32539 CGGATGGTACCGAGATTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATG 32480 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 | || | ||||| ||| || | ||| | ||| | | | | | || | Sbjct 32479 AAAGGGTTACCAGTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCACGC 32420 Query 139276 ATTTGACGCACGTAAA-GTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTC 139334 | | | | | || | | | || ||| || | ||||| || ||||| || Sbjct 32419 ACT-GTCTCGCGGCCACGGCCCTCCTTCTCATAGCGGTGATAGAGCTCCTCGAACTCATC 32361 Query 139335 ACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTT 139394 ||||||| |||| | || || || || || || ||||| |||| ||| ||||||| Sbjct 32360 ACCGTAGACGTCCGCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTT 32301 Query 139395 CGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC 139454 ||| || ||| ||||||| ||||| || ||||||| |||| | | | ||||| || Sbjct 32300 TTCCTGCACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGC 32241 Query 139455 CTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCG 139512 |||||| || ||| || | | || | ||| |||| || |||||| Sbjct 32240 ACGAACCTCTTCCTTGCCGTGGTTC--TTACGAAGGTCCAAGAAGCCAAATACATCAGCG 32183 Query 139513 TGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACG 139569 ||||| || || || |||||||| | || ||| || ||| ||||| || |||||| Sbjct 32182 TGCCACGGCTCGAGGTAGATGGCGAAAGCACCTGGACGCTTGTTGCCACCCTGGTCGACG 32123 Query 139570 TGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTG 139629 | || ||| || ||| | || || | ||| || ||||| ||| ||| ||||| Sbjct 32122 TAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGATGTACCGTTT 32063 Query 139630 GTGCTACGGATG--GGA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCG 139686 |||| || ||| ||| | | || || || | | || || |||| || || ||| Sbjct 32062 GTGCCACCAATGTAGGAGCCGGTG---GCACGAATGCGGTGCACGTTGAGACCAATACCG 32006 Query 139687 CCGCCAAATTTGGATATTAAAACGCAATCGCGTAA-TGTCTCGTATATACCTCTTATGCT 139745 || | ||||| || ||| | || | | ||| ||| ||||| || || ||||| Sbjct 32005 CCAGCGGTCTTGGAGATCAAAGCACA-TGTCTTAAGTGTATCGTAGATTCCATCAATGCT 31947 Query 139746 GTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGC 139805 ||| |||| ||| || || ||||| ||||| | || || | || || || Sbjct 31946 GTCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATGGGGTACCCGCGTT 31887 Query 139806 AAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGAT 139865 || || ||||| ||||| ||||| | | |||||| | ||||| || ||||| Sbjct 31886 GAAAAGTGTAGGGGAAGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGTCTCGAT 31827 Query 139866 GGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGAT 139925 ||| || | |||||| |||||||| ||||||| || ||||||||||| ||||| Sbjct 31826 GGCCTTCTCGATATCCTCGCCGTGGATGCCGACAGCCACGCGCATCAGCATGTGTTGTGG 31767 Query 139926 CCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCC 139985 |||||||| ||| ||| | ||| || || | ||| || |||||| |||| Sbjct 31766 GCGTTCGGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCTCGAGCGTCTTGAAGCC 31707 Query 139986 AAAGTACCTATAGTTGAAATCGAGCGCATA 140015 ||| | |||||||||||| | |||| Sbjct 31706 GAAGAATTGGTAGTTGAAATCGCGGTCATA 31677 >seq5 Length=873697 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || | || || ||| | | | Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| || || || || || || || Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || ||||||||||| || || | | || || || ||| Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || || ||||||||| Sbjct 38712 ATTCAGAAGGAGTCTACGCTGCACTTGGTG 38683 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || ||||||||||| || || | | Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCG 39061 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || || || || || || ||||| ||||| Sbjct 39060 GATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAG 39001 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || ||| | || ||| | | | | || || || || Sbjct 39000 CAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAAT 38941 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| |||||||| || || ||||||||| Sbjct 38940 ATTCAGAAGGAATCCACGCTCCACTTGGTG 38911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896171575120