Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq39 122 1e-21 seq13 118 2e-20 seq20 116 6e-20 seq93 104 4e-16 >seq39 Length=354817 Score = 122 bits (134), Expect = 1e-21 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||| ||||||||| |||||||||| | || |||||||| || |||||| Sbjct 38445 GCTGCCAACTACCTGGACATCAAGGCCCTCCTCGACGTCGGTTGCAAGACGGTCGCCAAC 38504 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| ||||| || ||||| ||||| || |||||| || ||| Sbjct 38505 ATGATCAAGGGCAAGTCCCCCGACGAGATCCGAAAGACGTTCAACATCCAGAACG 38559 >seq13 Length=704243 Score = 118 bits (130), Expect = 2e-20 Identities = 184/260 (71%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| |||||||||||||| | | Sbjct 440298 TGACACCAGCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCCA 440239 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||| |||||| | ||| ||||||| | ||| ||| | |||| Sbjct 440238 AGGAGATATTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTACACCTTGGTGTTACCGA 440179 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| |||||||| ||||| |||||||| ||||||||||||| ||||||| Sbjct 440178 GAGCCAAGAGCAGACGGTCGGCAACGAACTCAATGTATTGGCACATGAGGGTAGCGTTCA 440119 Query 794071 TGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| |||||| | ||||| | ||| | | || || | |||||| ||| || Sbjct 440118 TGCCGAGCAGAGCGCAA--GGCAGAGCCTCAGTCAGGAATTCCTGCTCGATTGTGACAGC 440061 Query 794129 CTCGATGATGATCTGCCTGG 794148 || ||||||| |||||| Sbjct 440060 TTCAGTGATGAT-GGCCTGG 440042 Score = 107 bits (118), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || ||||| |||||||||| ||| || || |||||| || | |||||||| Sbjct 439608 AAGCACCTCGCCTCGGGTATTTGTACTTCGCCGGAGAAGCGCTCGACTAGGTTCTCGTTG 439549 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||| || ||||||||||||||| |||||||| ||||||| ||||||||| Sbjct 439548 ACGATGCCATCTGAGGCGGCGAAAAAGGCTAGGACGTGGGAGATAAAGAAGCGCTCGTCG 439489 Query 796261 TCGCTGA---GCGAGACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGGC 796313 ||| | | || | ||||| |||| || | ||| || | ||| ||||| Sbjct 439488 TCGTTCAATCGCTTGTTCCAGT----CGTGGAGATCCTTGGAGAGATCAATCTCTTCGGC 439433 Query 796314 GGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||| ||||| || |||||||| |||||||| | ||| Sbjct 439432 TGTCCAGAAGGATGCTTCGGCCTTCTTGTACATTTGCCA 439394 >seq20 Length=546136 Score = 116 bits (128), Expect = 6e-20 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 2411377 TCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTG 2411433 |||||||| || ||||||||| | | ||| || ||||| |||||| |||||| Sbjct 232353 TCGTCGAGGACGTCGATCTTGGAGTCTGGGTCGGAGGAACTCATTTTGCCG-CCTTGG-- 232297 Query 2411434 AGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGG 2411493 ||||| || |||| ||||| | |||||| ||||| |||||| | ||| || Sbjct 232296 AGGCCGGGGACCATTGGGTTCATTAGGTGGGCGCGCTCTTTGTAGCCGATTTTCGGGAGC 232237 Query 2411494 TGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 2411553 ||| || | ||| ||||||||||||||||| ||||| || || | || ||| Sbjct 232236 ACGTCTTTTGCTAGGGCGAAGATCTTGCGCTGGTCTACGCCGCCGAATTGTACATCTACG 232177 Query 2411554 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAG 2411597 ||||||| ||||||||||| || |||||||| ||||||| ||| Sbjct 232176 TCGAGGTATTGCTCGTCGAGCGCTTGCATGAGGGGGTAGATGAG 232133 >seq93 Length=73557 Score = 104 bits (114), Expect = 4e-16 Identities = 288/445 (65%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||| ||||||||||||| | || |||| || || |||| |||||| Sbjct 32571 ACTCGATGATCTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGATTCTTCTGGTT 32514 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| ||| ||||||| |||||| | || ||| ||||| |||| || Sbjct 32513 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATGAAAGGGTTACCAGTCTCCGTCTGAGC 32454 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCT 2071747 | || |||||| |||||| | | || |||| | |||||| ||||||| Sbjct 32453 CTCGAGGATGGCATACCAAAGCTTCTGGGCACGCACTGT----CTCGCGGCCACGGCCCT 32398 Query 2071748 NNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGG 2071807 |||| | || || | | |||| | || ||||||| Sbjct 32397 CCTTCTCATAGCGGTGATAGAGCTCCTCGAACTCATCACCGTAGACGTCCGCGAGGCCGG 32338 Query 2071808 GCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACA 2071867 | |||||| ||||| | |||| ||| |||||| | ||| || ||| || | Sbjct 32337 GAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTTCATGAAGA 32278 Query 2071868 GGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGT 2071927 | ||| ||||||| |||| ||||| ||||| || || ||| ||||||||||||| Sbjct 32277 GATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGTGGT 32218 Query 2071928 TCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAA 2071987 |||| ||||| | || | | | || |||||||||||||| |||||| ||| | Sbjct 32217 TCTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTAGATGGCGA 32158 Query 2071988 AGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | || || |||||| ||| || Sbjct 32157 AAGCACCTGGACGCTTGTTGCCACC 32133 Score = 102 bits (112), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| |||| ||||||||||| | || || || || Sbjct 32132 CTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGA 32073 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | | ||||| ||| | ||| || | |||| || | || Sbjct 32072 TGTACCGTTTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGACC 32013 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | || || | || || || |||||||| || || Sbjct 32012 AATACCGCCAGCGGTCTTGGAGATCAAAGCACATGTCTTAAGTGTATCGTAGATTCCATC 31953 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || ||| |||||||||| | || ||||| ||||| Sbjct 31952 AATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGACGA 31914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916219380861506