Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 1e-18
seq44 102 5e-17
seq9 89.7 3e-13
>seq5
Length=873697
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 10/197 (5%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| ||||| || || | | | || ||||| || || || |||||
Sbjct 38701 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAA 38760
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903
||| || || |||||||| | || | ||||||||||| | || || |||||||
Sbjct 38761 GATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTT 38820
Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960
|||| ||||| | || || || || | ||| |||||||| || ||||| |||
Sbjct 38821 ATCGATGGTATCGCTCGAT-----TCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTC 38875
Query 34961 TTTACAAAGATCTGCAT 34977
|| || |||||||||||
Sbjct 38876 TTCACGAAGATCTGCAT 38892
Score = 89.7 bits (98), Expect = 3e-13
Identities = 151/218 (69%), Gaps = 12/218 (6%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||| || |||||||| || | ||| ||||
Sbjct 38909 AGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCT 38968
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| | ||||| || ||||| || || |||||||| ||| | || | |||||||| ||
Sbjct 38969 TCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCC 39028
Query 34886 TTTATTTTTTGTTTGACG-----GATGCTAT-CGATTCATTGGCCTCGACATCAACGGTT 34939
| || || |||||| |||| ||| |||| | ||| || || | ||
Sbjct 39029 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGAT------GACTCCACCTCGAGCGTA 39082
Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| || || | ||||| || || ||||||||
Sbjct 39083 ATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Score = 89.7 bits (98), Expect = 3e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| || || ||||| |||||| | || |||| || || ||||| ||||||||
Sbjct 39157 CTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 39216
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| || ||||| ||| |||| | |||||||||||
Sbjct 39217 GATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTGTC 39255
>seq44
Length=299893
Score = 102 bits (112), Expect = 5e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 198057 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 197998
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||| || || |||||||| | || | |||||||||||
Sbjct 197997 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 197939
>seq9
Length=754770
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| || |||||||| ||||| ||||| || ||| |||| | ||
Sbjct 276162 AGGACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 276221
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| |||||||| ||||| || |||||||| | || | |||||||||||
Sbjct 276222 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 276280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691791777226
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |