Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 107 1e-18 seq44 102 5e-17 seq9 89.7 3e-13 >seq5 Length=873697 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || || | | | || ||||| || || || ||||| Sbjct 38701 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAA 38760 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903 ||| || || |||||||| | || | ||||||||||| | || || ||||||| Sbjct 38761 GATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTT 38820 Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 |||| ||||| | || || || || | ||| |||||||| || ||||| ||| Sbjct 38821 ATCGATGGTATCGCTCGAT-----TCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTC 38875 Query 34961 TTTACAAAGATCTGCAT 34977 || || ||||||||||| Sbjct 38876 TTCACGAAGATCTGCAT 38892 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||| || |||||||| || | ||| |||| Sbjct 38909 AGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCT 38968 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | ||||| || ||||| || || |||||||| ||| | || | |||||||| || Sbjct 38969 TCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCC 39028 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTAT-CGATTCATTGGCCTCGACATCAACGGTT 34939 | || || |||||| |||| ||| |||| | ||| || || | || Sbjct 39029 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGAT------GACTCCACCTCGAGCGTA 39082 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || | ||||| || || |||||||| Sbjct 39083 ATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || ||||| |||||| | || |||| || || ||||| |||||||| Sbjct 39157 CTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAA 39216 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || ||||| ||| |||| | ||||||||||| Sbjct 39217 GATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTGTC 39255 >seq44 Length=299893 Score = 102 bits (112), Expect = 5e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 198057 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 197998 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 197997 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 197939 >seq9 Length=754770 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || |||||||| ||||| ||||| || ||| |||| | || Sbjct 276162 AGGACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 276221 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||| ||||| || |||||||| | || | ||||||||||| Sbjct 276222 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 276280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691791777226