Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 1e-13 seq5 89.7 5e-13 >seq13 Length=704243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | || | ||| |||||| | || | ||| ||||||||||| || ||||| Sbjct 439568 GCTCGACTAGGTTCTCGTTGACGATGCCATCTGAGGCGGCGAAAAAGGCTAGGACGTGGG 439509 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | |||||| || || | |||||||| | ||||||||||| | | |||||||| | Sbjct 439508 AGATAAAGAAGCGCTCGTCGTCGTTCAATCGCTTGTTCCAGTCGTGGAGATCCTTGGAGA 439449 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCA 110886 || ||||||||| | ||||| | | | |||||||||||| |||||| Sbjct 439448 GATCAATCTCTTCGGCTGTCCAGAAGGATGCTTCGGCCTTCTTGTACATTTGCCA 439394 >seq5 Length=873697 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || || || | || ||| |||| || || | || | Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGA-GTCATC 39062 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||| ||||| | || || || ||| ||||| |||||||| || || ||||| Sbjct 39061 GGATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCA 39002 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | ||||||| || ||||| || | ||||||| | | | || || ||||| Sbjct 39001 GCAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAA 38942 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| || |||||||| | || || ||| Sbjct 38941 TATTCAGAAGGAATCCACGCTCCACTTGGTG 38911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092986825280