Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13 147 3e-29 seq93 104 3e-16 >seq13 Length=704243 Score = 147 bits (162), Expect = 3e-29 Identities = 210/292 (72%), Gaps = 13/292 (4%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || |||||||| || ||||| ||||| ||||| ||| | || ||| Sbjct 439394 TGGCAAATGTAC-AAGAAGGCCGAAGCATCCTTCTGGACAGCCGAAGAGATTGATCTCTC 439452 Query 1455839 CGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 | || |||| ||||| || ||| ||||||||||||| || ||| Sbjct 439453 CAAGGATCTCCACG----ACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTTATCT 439508 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||||| |||||||| ||||||||||| ||||||||| | || Sbjct 439509 CCCACGTCCTAGCCTTTT-TCGCCGCCTCAGATGGCATCGTCAACGAGAACCTAGTCGAG 439567 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| || || ||| | || ||||| | | || ||||| ||||||||| Sbjct 439568 CGCTTCTCCGGCGAAGTACAAATACCCGAGGCGAGGTGCTTCTACGGCTTCCAGATCATG 439627 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || || ||||||||||| || || ||||| || ||||||||||||||| ||| Sbjct 439628 ATGGAGAACATCCACTCAGAGACATACTCTCTGCTGATCGACACCTACATCA 439679 >seq93 Length=73557 Score = 104 bits (114), Expect = 3e-16 Identities = 203/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| |||||||||| ||| ||||| || | || || || || || || Sbjct 31833 ACATACGACTACATGTCGCAGAAGTACTTCACACACGCTTCCCCTACACTTTTCAACGCG 31892 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || || |||| ||||| ||||| || | |||||||||| || || Sbjct 31893 GGTACCCCATCGCCTCAGATGTCGTCCTGCTTCCTCATCGACATGAAGGAAGACAGCATT 31952 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || ||||| || || || ||| || || | ||||||||| | || ||||| || Sbjct 31953 GATGGAATCTACGATACACTTAAGACATGTGCTTTGATCTCCAAGACCGCTGGCGGTATT 32012 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||| | || ||| | ||| ||||| | | ||||| ||||| Sbjct 32013 GGTCTCAACGTGCACCGCATTCGTGCCACCGGCTCCTACATTGGTGGCACAAACGGTACA 32072 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || || | |||||||| || || | ||| |||| || ||||||||||||||| Sbjct 32073 TCGAATGGTCTCATTCCCATGCTCCGTGTCTACAACAACACTGCTCGCTACGTCGACCAG 32132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177786701233148