Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq93 268 1e-66 seq13 84.2 3e-11 >seq93 Length=73557 Score = 268 bits (296), Expect = 1e-66 Identities = 1111/1736 (64%), Gaps = 25/1736 (1%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| || ||||| ||||| | |||||| || | ||||| || | | Sbjct 33490 CGGAGGTAGTACATGCCCGTCTTTAGTCCGAGCTTCCATCCGGCGAAGTGCATGGAGGTG 33431 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | |||| ||| || || | |||| || ||| | | ||| |||||| |||||| Sbjct 33430 ATCTTGCCCATGGTAGGCTCCTTCATGTGGATGTTTAGAGACTGAGATTGGTCGATGAAG 33371 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTG 110539 || || | || ||||| | ||| | | ||| || | || ||||| || || Sbjct 33370 GCTCCACGGTCAGCAGCCATCTGAATAATAG--TTCG-CTGAGAGATCTCCCAGACAGTC 33314 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 || || ||||| | || || ||||| | | ||| | ||| || || ||| | Sbjct 33313 TTGTATAGGGTCTTGGTCTCCTCGGGGATGTTGGGGATCCTTGCGATAGAGCCACCCTCG 33254 Query 110600 TTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACG 110659 | || | | |||||| | || |||||| | || || | |||||| |||| Sbjct 33253 GCGATGATACGGTTCTTCATGTTCTCGGACCACAAGCCCATGTCGACGAGGTCCTTGAGC 33194 Query 110660 AGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTT 110719 || |||||||| ||||||||| |||||| || | ||||||||||| Sbjct 33193 AGCCATGGGTTGACAACCTGAAACTCACCAGCGAGGACTCGACGGGAGTAGATGTTTGAG 33134 Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 ||||| || || ||||| || || || || | ||| || | |||||| || || ||||| Sbjct 33133 GTGTACGGCTCGAAGCACTCGTTGTTGCCAAGGATCTGGGAGGTGGACGCAGTGGGCATG 33074 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 || || || | || ||| || | ||| | || || ||||| || || Sbjct 33073 GGAGCAATGAGGAGGGAGTTGCGGACACCATGCTGAGCAATCTTCTCCTTCAGCGACGCC 33014 Query 110840 CAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898 ||||| || | | | || | || |||| |||| ||| | || || | ||||| || Sbjct 33013 CAGTCCCAGAGGTCGGTAGGCGTGACGTTCC-ACATATCATATTGGAGGATGCCTTGAGA 32955 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 110958 | || || ||||| | || | ||| | || | | | || | || ||| | Sbjct 32954 AACAGGCGAGCCCTCGTATGTCTTATATGGGCCGAGTTCCTTTGCAATGTCGCAGGAAGA 32895 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 || | || || || ||||| || ||||| || || | | ||| || || Sbjct 32894 GGTGAGAGCAGCATGGTAGATGGTCTCGAAGATCTGAATGTTGAGTTTCTTAGCCTCCGG 32835 Query 111019 TGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAAC 111077 ||| || |||| | || ||| | || || |||| ||||||||||| ||||||| | Sbjct 32834 TGATTCGAATG-GCAGGCGCAGAGCAAGGAAGGCATCGGCGAGACCTTGCACACCCATGC 32776 Query 111078 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGT 111137 ||||||| | ||| || | || || || || ||||| || ||| | Sbjct 32775 CAATAGGGCGGTGACGGAAGTTGCTACGACGTGCCTCTTCGACGGGGTAGTGATTGACTT 32716 Query 111138 CAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT 111197 | || | || ||||| || || | || |||| ||| || || || | | | Sbjct 32715 CGATAATCTTATTCAGATTACGCGTCACGACCTGAGTGACTTCGTGCAGCTTCTGGAAGT 32656 Query 111198 CAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAA 111257 | || || | || | | ||| || ||| || || | || ||||| ||||||| Sbjct 32655 CGAACTCGCCACGCTTGTAGTCGACGAACGATGGGAGAGCAAGAGAAGCCAAGTTGCAAA 32596 Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317 |||| |||||| | |||||||| | || || || || | |||||| || | Sbjct 32595 CAGCGACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGGA 32536 Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377 | || || | |||||| ||||| ||||| |||||| ||||||||||| |||||| | | Sbjct 32535 TGGTACCGAGATTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATGAAAG 32476 Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACA 111436 | | || ||||||||||| | | ||| || || | ||||| | || | ||| | || Sbjct 32475 GGTTACCAGTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTG-GGCACGCACT 32417 Query 111437 ATGGCGTTGGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495 | || | | || |||||| ||| || | || ||||| | || ||||| ||||| Sbjct 32416 GTCTCGCGGCCACGGCCCTCCTTCTCATAGCGGTG-ATAGAGCTCCTCGAACTCATCACC 32358 Query 111496 CACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC 111555 |||| | ||| || || |||| || || || | || | ||| | || ||| Sbjct 32357 GTAGACGTCCGCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTC 32298 Query 111556 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCG 111615 || || ||||||||||| || || || |||||||| | | ||||| || | || Sbjct 32297 CTGCACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACG 32238 Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 111675 | ||||||| | || ||||| || | || | ||| | | | ||| |||||||| Sbjct 32237 AACCTCTTCCTTGCCGTGGTTCTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCA 32178 Query 111676 TGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATA 111729 ||||| || |||| |||| || || | ||||| ||| | || | || || Sbjct 32177 CGGCTCGAGGTAGATGGCGAAAGCACC---TGGACGCTTGTTGCCACCCTGGTCGACGTA 32121 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 ||| || ||| ||| | || || ||||| ||||| | ||||| ||| ||| ||||| Sbjct 32120 GCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGATGTACCGTTTGT 32061 Query 111790 CCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGC 111849 || | ||| || |||| | | || | || | |||||||| ||||| Sbjct 32060 GCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGACCAATACCGCCAGC 32001 Query 111850 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 ||| ||||| ||||| | |||| || | ||||| || | || ||| || Sbjct 32000 GGTCTTGGAGATCAAAGCACATGTCTTAAGTGTATCGTAGATTCCATCAATGCTGTCTTC 31941 Query 111910 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| || |||| |||||||| |||||||| || ||| ||||| || ||||| || Sbjct 31940 CTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATGGGGTACCCGCGTTGAAAAG 31881 Query 111970 GGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAG 112028 || || | ||||| |||| ||| | || ||||| | |||||||||||| | | | Sbjct 31880 TGTAGGGGAAGCGTGTGTGAA-GTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCT 31822 Query 112029 AATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || ||||||||||||| || || ||||| | ||||| |||||| Sbjct 31821 TCTCGATATCCTCGCCGTGGATGCCGACAGCCACGCGCATCAGCATGTGTTGTGGG 31766 >seq13 Length=704243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 336/523 (64%), Gaps = 22/523 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| |||||||||||||| ||| | | | || || ||||| Sbjct 440281 TAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATATTCTCCATG 440222 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACC-----CCAACTTGTTTGAG 122483 ||||| || || || | || || | | | |||| ||| |||| ||| Sbjct 440221 AAGTCGAAGGGGTTGGTGGCATTGTACACCTTGGTGTTACCGAGAGCCAA-------GAG 440169 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 ||||| || | || |||||||||| | | |||| || |||||| |||| || Sbjct 440168 CAGACGGTCGGCAACGAACTCAATGTATTGGCACATGAGGGTAGCGTTCATGCCGAGCAG 440109 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 || || || || || | ||| | | ||| || || || || | | ||| Sbjct 440108 AGCGCAAGGCAGAGCCTCAGTCAGGAATTCCTGCTCGATTGTGACAGCTTCAGTGATGAT 440049 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGC 122660 ||| |||| | || | |||| | | || | | || || ||| || ||| Sbjct 440048 GGCCTGGACCGACTCCTTGCTGGGACGAGTGTTCAGGAGAGAAAAGAGGAGG--CA-GGC 439992 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 || || ||| | ||||| || || ||||| || || || |||||| || || || Sbjct 439991 GAAATCGGTGTGCATGCCCTCGTCACGCGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGG 439932 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 ||||||||| |||||||||| ||| | || | | ||| || || |||||||||||| Sbjct 439931 CATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAACCACTGAAGAAGATACC 439872 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACC 122839 ||| || || ||||| | ||| || | || |||| | ||| ||| || | || Sbjct 439871 CTCGACGGCAGCGAACGCGACAAGACGGTTCGCAAAGGTG-GAGTTCTTATCAGAGATCC 439813 Query 122840 ATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 || || ||||| | |||||||| || ||||| || || Sbjct 439812 ATCGCAGAGCCCAGTCGGCCTTCTTGCGGATGCATGGAACTGT 439770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030005998400