Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq5 141 3e-28
seq21 134 4e-26
seq12 89.7 2e-12
seq48 86.0 2e-11
>seq5
Length=873697
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || || || || |||||||| || ||
Sbjct 38890 CATACCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTC 38949
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || ||||||||||| | || || ||||| || || |||||||||||||| ||
Sbjct 38950 CGAGAGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGG 39009
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || ||||||||||| || | || || || || || | ||| |||| ||
Sbjct 39010 AGGGATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTC 39069
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || |||| ||||| || || | ||| || || |||||||||||
Sbjct 39070 CACCTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Score = 125 bits (138), Expect = 2e-23
Identities = 160/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || |||||||||||||| ||||| || || || || |
Sbjct 39398 TTTGCATACCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGT 39457
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || || || || ||||| || || || || || || ||||| | || |||||||
Sbjct 39458 AATCGGACAAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGAT 39517
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| ||||| || ||||| || || ||| ||||| || || |||| || ||
Sbjct 39518 CGGGGGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTTACGTTGTCGATCGTGTCTGAC 39576
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
| || || || || || | ||||| ||||| | |||
Sbjct 39577 GACTCCACCTCGAGGGTGATAGTCTTACCGGTGACTGT 39614
Score = 123 bits (136), Expect = 8e-23
Identities = 453/705 (64%), Gaps = 7/705 (1%)
Strand=Plus/Plus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
|||| || || ||||| | || || || || |||||||| | | ||| | ||||||
Sbjct 306606 CCGCAATCGGTATCGACCTGGGAACAACCTACTCTTGTGTAGGTATTTTCCGGGATGATC 306665
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | ||||| || || || || || || ||| | || ||||| || | |||||| || |
Sbjct 306666 GCATCGAAATCATCGCCAACGACCAGGGCAACCGCACCACGCCCTCGTTCGTTGCTTTCA 306725
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
| || || ||||| | || || || || || || || |||| || || || |
Sbjct 306726 CAGACACCGAGCGCCTCATCGGCGACTCAGCGAAGAACCAAGTCGCCATGAACCCCGTTA 306785
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACA 349434
| || || || || || ||||| || || ||| | | ||| | || | | | ||
Sbjct 306786 ACACCGTCTTCGACGCAAAGCGCCTCATCGGTCGCAAATTTGCCGATCCTGAGGTCCAGG 306845
Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494
| || | || || || || || | || | | | ||| || | || || | ||
Sbjct 306846 --CCGACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAG--GGCGGCAAGCCTGTCAT 306900
Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554
| || || | || || || | || || ||| || || || ||||| |||||
Sbjct 306901 CCAAGTCGAGTTCAAGGGCGAGGAGAAGACTTTCACACCTGAGGAGATCTCATCCATGGT 306960
Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614
|| || |||| ||||| || || |||| | |||| || || | | || ||
Sbjct 306961 CTTGACCAAGATGAGGGAAACCGCGGAGTCATACCTCGGTGGCACCGTCAACAACGCCGT 307020
Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674
| | ||||| || ||||| || || || |||||||| || || || ||||||||
Sbjct 307021 TGTCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCTGGTCT 307080
Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734
|||||| || | || || || | || || || || ||||| || || || || || ||
Sbjct 307081 CATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTA 307140
Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
|| || || || | || | || || | || || || ||||| ||||||||
Sbjct 307141 CGGTCTCGACAAGAAGACCACCGGTGAGCGCAACGTCCTCATCTTCGATTTGGGTGGTGG 307200
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||| || ||||| || || | || |||| ||||| || || || || || | |||||
Sbjct 307201 TACCTTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCGACTGC 307260
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899
|| || || || | ||||| || || || || || || |||||
Sbjct 307261 CGGAGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGT 307305
Score = 122 bits (134), Expect = 3e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || ||||| ||||||||||| || || ||||| || ||
Sbjct 39118 CATACCACCGCGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTC 39177
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|||| || || ||||| || || || || || || ||||| | || |||||||| ||
Sbjct 39178 GGATAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGG 39237
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || ||||| ||||| | ||| || | ||
Sbjct 39238 CGGAATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTC 39297
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || | || || |||||
Sbjct 39298 GACCTCAAGCGTGATAGTTTTGCCGGT 39324
>seq21
Length=517113
Score = 134 bits (148), Expect = 4e-26
Identities = 256/372 (69%), Gaps = 10/372 (3%)
Strand=Plus/Plus
Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATT 349589
||| || ||||| || | |||||| | | ||| |||||||| | ||||| ||| |||
Sbjct 392538 ACCTGAGGAAATCTCGGCCATGGTTCTCGGTAAGATGAAGGAGGTCGCTGAGAGC-TATC 392596
Query 349590 TAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGC 349649
| || || | || | | |||||| |||| || || ||||| || || || || ||||
Sbjct 392597 TCGGCGAGCCGGTCAAGAACGCTGTTGTTACCGTCCCCGCCTACTTCAACGACGCTCAGC 392656
Query 349650 GTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATG 349709
| |||| || || || || || | || || || |||| ||||| | | | || |
Sbjct 392657 GCGCTGCCACCAAGGACGCCGGAACTATCGCCGGTCTAAACGTTCTCCGTGTCGTCAACG 392716
Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa--- 349766
||||||| ||||| || | || || || || || || || || || ||| ||
Sbjct 392717 AACCCACCGCTGCCGCTCTGGCTTACGGCCTCGACAA---GACCGATCA-GAAGGAACGC 392772
Query 349767 -aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825
| | ||| | | ||| | ||||||||||| || ||||| ||| | || || | |||
Sbjct 392773 CAGGTCCTTGTCTACGATCTCGGTGGTGGTACATTCGATGTTTCAATTCTCACCATCGAA 392832
Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885
||||| |||| || || | | ||||| |||||||| ||||||||||| || |||||
Sbjct 392833 GAGGGCGTTTTCGAGGTCCAGTCTACTGCCGGTGATACTCATCTTGGTGGTGAGGATTTC 392892
Query 349886 GATAATCGTCTC 349897
|| || ||| ||
Sbjct 392893 GACAACCGTGTC 392904
>seq12
Length=714740
Score = 89.7 bits (98), Expect = 2e-12
Identities = 195/292 (67%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 378175 ACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATA 378234
|||||| ||| ||| | ||||| | ||||| | ||| || | | || || ||
Sbjct 346360 ACAGTCCCATCGTATTTGACCATGACGTCTTCGAGTGCCTTGACTAAACGACGTTGGATG 346419
Query 378235 TAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCA 378294
|| ||||| | ||| || ||||||||||| || | ||| |||||||| |||| ||
Sbjct 346420 TATCCAGTCTCTGCAGTCTTCACTGCAGTATCGATGAGACCTTCACGACCAGCCATAGCG 346479
Query 378295 TGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTT 378354
|| ||||| || || | || || || |||| | | | || |||| | || ||||||
Sbjct 346480 TGAAAGAAGAACTCGGACGGTGTGAGACCACGGAGATAGGAGTTCTCTACGAAGCCTCTT 346539
Query 378355 GCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATAT 378414
| | || |||| ||| | ||||| |||| |||| || | || || || || |
Sbjct 346540 GACTCCGGTGAATAATCGTCCTTTGTGAAATGCGGTAGGGTCCTATACTTGAATCCGAAA 346599
Query 378415 GGAATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAG 378466
|| || || | || || ||| |||||||||| || ||||||||||
Sbjct 346600 GGGATACGCTGACCTTCGACAGCTTGTTGACCAACGAGAGCCACCATTTGAG 346651
>seq48
Length=267834
Score = 86.0 bits (94), Expect = 2e-11
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 266997 CACGGACAAAAAGGTACCATTGGTACGATTATTCCTGAAGAAAATATGCCATTTAATGAA 267056
||||||||||||||||| | |||| || | | ||||| | |||||||| || ||
Sbjct 105980 CACGGACAAAAAGGTACAACTGGTCTTATCGTCCAACAAGAAGACATGCCATTCAACGAC 106039
Query 267057 GATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTAGTCGTATGACA 267113
|| || ||| | || || ||||| || |||||||| | | | |||||||||||||||
Sbjct 106040 GAGGGTATTTGCCCCGACATTATCATGAATCCTCACGGTTTCCCTAGTCGTATGACA 106096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515249468793962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |