Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 141 3e-28 seq21 134 4e-26 seq12 89.7 2e-12 seq48 86.0 2e-11 >seq5 Length=873697 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || || || || |||||||| || || Sbjct 38890 CATACCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTC 38949 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || ||||||||||| | || || ||||| || || |||||||||||||| || Sbjct 38950 CGAGAGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGG 39009 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || | || || || || || | ||| |||| || Sbjct 39010 AGGGATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTC 39069 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || | ||| || || ||||||||||| Sbjct 39070 CACCTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 125 bits (138), Expect = 2e-23 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || |||||||||||||| ||||| || || || || | Sbjct 39398 TTTGCATACCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGT 39457 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || || || ||||| || || || || || || ||||| | || ||||||| Sbjct 39458 AATCGGACAAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGAT 39517 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| ||||| || ||||| || || ||| ||||| || || |||| || || Sbjct 39518 CGGGGGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTTACGTTGTCGATCGTGTCTGAC 39576 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 | || || || || || | ||||| ||||| | ||| Sbjct 39577 GACTCCACCTCGAGGGTGATAGTCTTACCGGTGACTGT 39614 Score = 123 bits (136), Expect = 8e-23 Identities = 453/705 (64%), Gaps = 7/705 (1%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || ||||| | || || || || |||||||| | | ||| | |||||| Sbjct 306606 CCGCAATCGGTATCGACCTGGGAACAACCTACTCTTGTGTAGGTATTTTCCGGGATGATC 306665 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | ||||| || || || || || || ||| | || ||||| || | |||||| || | Sbjct 306666 GCATCGAAATCATCGCCAACGACCAGGGCAACCGCACCACGCCCTCGTTCGTTGCTTTCA 306725 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || || ||||| | || || || || || || || |||| || || || | Sbjct 306726 CAGACACCGAGCGCCTCATCGGCGACTCAGCGAAGAACCAAGTCGCCATGAACCCCGTTA 306785 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACA 349434 | || || || || || ||||| || || ||| | | ||| | || | | | || Sbjct 306786 ACACCGTCTTCGACGCAAAGCGCCTCATCGGTCGCAAATTTGCCGATCCTGAGGTCCAGG 306845 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 | || | || || || || || | || | | | ||| || | || || | || Sbjct 306846 --CCGACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAG--GGCGGCAAGCCTGTCAT 306900 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 | || || | || || || | || || ||| || || || ||||| ||||| Sbjct 306901 CCAAGTCGAGTTCAAGGGCGAGGAGAAGACTTTCACACCTGAGGAGATCTCATCCATGGT 306960 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || || |||| ||||| || || |||| | |||| || || | | || || Sbjct 306961 CTTGACCAAGATGAGGGAAACCGCGGAGTCATACCTCGGTGGCACCGTCAACAACGCCGT 307020 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | | ||||| || ||||| || || || |||||||| || || || |||||||| Sbjct 307021 TGTCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCTGGTCT 307080 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | || || || | || || || || ||||| || || || || || || Sbjct 307081 CATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTA 307140 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | || | || || | || || || ||||| |||||||| Sbjct 307141 CGGTCTCGACAAGAAGACCACCGGTGAGCGCAACGTCCTCATCTTCGATTTGGGTGGTGG 307200 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || | || |||| ||||| || || || || || | ||||| Sbjct 307201 TACCTTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCGACTGC 307260 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || || || | ||||| || || || || || || ||||| Sbjct 307261 CGGAGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGT 307305 Score = 122 bits (134), Expect = 3e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || ||||| ||||||||||| || || ||||| || || Sbjct 39118 CATACCACCGCGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTC 39177 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| || || || || || || ||||| | || |||||||| || Sbjct 39178 GGATAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGG 39237 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| ||||| | ||| || | || Sbjct 39238 CGGAATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTC 39297 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | || || ||||| Sbjct 39298 GACCTCAAGCGTGATAGTTTTGCCGGT 39324 >seq21 Length=517113 Score = 134 bits (148), Expect = 4e-26 Identities = 256/372 (69%), Gaps = 10/372 (3%) Strand=Plus/Plus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATT 349589 ||| || ||||| || | |||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 392538 ACCTGAGGAAATCTCGGCCATGGTTCTCGGTAAGATGAAGGAGGTCGCTGAGAGC-TATC 392596 Query 349590 TAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGC 349649 | || || | || | | |||||| |||| || || ||||| || || || || |||| Sbjct 392597 TCGGCGAGCCGGTCAAGAACGCTGTTGTTACCGTCCCCGCCTACTTCAACGACGCTCAGC 392656 Query 349650 GTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATG 349709 | |||| || || || || || | || || || |||| ||||| | | | || | Sbjct 392657 GCGCTGCCACCAAGGACGCCGGAACTATCGCCGGTCTAAACGTTCTCCGTGTCGTCAACG 392716 Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa--- 349766 ||||||| ||||| || | || || || || || || || || || ||| || Sbjct 392717 AACCCACCGCTGCCGCTCTGGCTTACGGCCTCGACAA---GACCGATCA-GAAGGAACGC 392772 Query 349767 -aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 | | ||| | | ||| | ||||||||||| || ||||| ||| | || || | ||| Sbjct 392773 CAGGTCCTTGTCTACGATCTCGGTGGTGGTACATTCGATGTTTCAATTCTCACCATCGAA 392832 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 ||||| |||| || || | | ||||| |||||||| ||||||||||| || ||||| Sbjct 392833 GAGGGCGTTTTCGAGGTCCAGTCTACTGCCGGTGATACTCATCTTGGTGGTGAGGATTTC 392892 Query 349886 GATAATCGTCTC 349897 || || ||| || Sbjct 392893 GACAACCGTGTC 392904 >seq12 Length=714740 Score = 89.7 bits (98), Expect = 2e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 378175 ACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATA 378234 |||||| ||| ||| | ||||| | ||||| | ||| || | | || || || Sbjct 346360 ACAGTCCCATCGTATTTGACCATGACGTCTTCGAGTGCCTTGACTAAACGACGTTGGATG 346419 Query 378235 TAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCA 378294 || ||||| | ||| || ||||||||||| || | ||| |||||||| |||| || Sbjct 346420 TATCCAGTCTCTGCAGTCTTCACTGCAGTATCGATGAGACCTTCACGACCAGCCATAGCG 346479 Query 378295 TGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTT 378354 || ||||| || || | || || || |||| | | | || |||| | || |||||| Sbjct 346480 TGAAAGAAGAACTCGGACGGTGTGAGACCACGGAGATAGGAGTTCTCTACGAAGCCTCTT 346539 Query 378355 GCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATAT 378414 | | || |||| ||| | ||||| |||| |||| || | || || || || | Sbjct 346540 GACTCCGGTGAATAATCGTCCTTTGTGAAATGCGGTAGGGTCCTATACTTGAATCCGAAA 346599 Query 378415 GGAATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAG 378466 || || || | || || ||| |||||||||| || |||||||||| Sbjct 346600 GGGATACGCTGACCTTCGACAGCTTGTTGACCAACGAGAGCCACCATTTGAG 346651 >seq48 Length=267834 Score = 86.0 bits (94), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 266997 CACGGACAAAAAGGTACCATTGGTACGATTATTCCTGAAGAAAATATGCCATTTAATGAA 267056 ||||||||||||||||| | |||| || | | ||||| | |||||||| || || Sbjct 105980 CACGGACAAAAAGGTACAACTGGTCTTATCGTCCAACAAGAAGACATGCCATTCAACGAC 106039 Query 267057 GATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTCCTAGTCGTATGACA 267113 || || ||| | || || ||||| || |||||||| | | | ||||||||||||||| Sbjct 106040 GAGGGTATTTGCCCCGACATTATCATGAATCCTCACGGTTTCCCTAGTCGTATGACA 106096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249468793962