Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq93 266 4e-66 seq13 89.7 6e-13 >seq93 Length=73557 Score = 266 bits (294), Expect = 4e-66 Identities = 524/757 (69%), Gaps = 16/757 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGT-GTCCGT-GAGACGTACG 53252 |||||||| || | || |||||||| || || || || | | || | ||||| |||| Sbjct 31782 ATGCGCGTGGCTGTCGGCATCCACGGCGAGGA-TAT-CGAGAAGGCCATCGAGACATACG 31839 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| || |||||||| || ||||| | || || || |||||||| ||||| Sbjct 31840 ACTACATGTCGCAGAAGTACTTCACACACGCTTCCCCTACACTTTTCAACGCGGGTACCC 31899 Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| || |||||||||| ||||||||| | | |||||||| ||| || || || Sbjct 31900 CATCGCC-TCAGATGTCGTCCTGCTTCCTCATCGACATGAAGGAAGACAGCATTGATGGA 31958 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || || ||| ||||| ||||||||| | || ||||| ||| || Sbjct 31959 ATCTACGATACACTTAAGACATGTGCTTTGATCTCCAAGACCGCTGGCGGTATTGGTCTC 32018 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCC 53488 || ||| | | | ||||| | |||| | || || || ||||| | ||| Sbjct 32019 AACGTGCACCG-CATTCGTGCCACCGGCTCCTACATTGGTGGCACAAACGGTACATCGA- 32076 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 |||| || | || |||||||| |||| ||||||||| || || |||||| |||||||| Sbjct 32077 -ATGGTCTCATTCCCATGCTCCGTGTCTACAACAACACTGCTCGCTACGTCGACCAGGGT 32135 Query 53549 GGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 || ||||| | ||| | | ||||||||||||||||||||||||||||| || | | Sbjct 32136 GGCAACAAGCGTCCAGGTG-CTTTCGCCATCTACCTCGAGCCGTGGCACGCTGATGTATT 32194 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 | || | || || ||| ||| || || | |||||| | || ||| ||||| || Sbjct 32195 TGGCTTCTTGGACCTTCGTAAGAACCACGGCAAGGAAGAGGTTCGTGCCCGCGACCTCTT 32254 Query 53668 -TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 ||| ||||||||||| || || ||||||||| | ||| || | ||| |||||| Sbjct 32255 CTAC-GCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTGCAGGAAAACGGCGAGTGGA 32313 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 ||||||||||| |||||| ||||||||| || ||||||||||| ||||| | | Sbjct 32314 CGCTGATGTGCCCCAACGAGGCTCCCGGCCTCGCGGACGTCTACGGTGATGAGTTCGAGG 32373 Query 53787 AGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 || | |||| || | ||||||| | ||| || || | || Sbjct 32374 AGCTCTATCACCGCTATGAGAAGGAGGGCCGTGGCCGCGAGACAGTGCGTGCCCAGAAGC 32433 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| |||| |||||| || ||| |||||| || | || | |||| ||||||| Sbjct 32434 TTTGGTATGCCATCCTCGAGGCTCAGACGGAGACTGGTAACCCTTTCATGCTTTACAAGG 32493 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| ||||||||||||||||| |||| Sbjct 32494 ATGCCTGCAACCGCAAGAGCAACCAGAAGAATCTCGG 32530 Score = 134 bits (148), Expect = 2e-26 Identities = 301/446 (67%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||| ||| | || || ||||| || ||||| || | |||||| | |||||| Sbjct 33051 CGCAACTCCCTCCTCATTGCTCCCATGCCCACTGCGTCCACCTCCCAGATCCTTGGCAAC 33110 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||||||||| | ||||||||| || || ||| || |||||| Sbjct 33111 AACGAGTGCTTCGAGCCGTACACCTCAAACATCTACTCCCGTCGAGTCCTCGCTGGTGAG 33170 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 ||| | ||||| || |||||||||| | || | |||| | | Sbjct 33171 TTTCAGGTTGTCAACCCATGGCTGCTCAAGGACCTCGTCGACATGGGCTTGTGGTCCGAG 33230 Query 55664 CAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAATCTGGAGATTCCT 55720 | || |||| ||| | || | | || || || | | || ||| | ||| Sbjct 33231 AACATGAAGAACCGTATCATCGCCG-AGGGTGGCTCTATCGCAAGGATCCCCAACATCCC 33289 Query 55721 C--TGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 | | | | |||| | ||| ||| || |||||||| | ||| | | | ||| Sbjct 33290 CGAGGAGAC-CAAGACCCTATACAAGACTGTCTGGGAGATCTCTCAGCGAACTATTATTC 33348 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| |||||| ||||| || | ||||||||| || |||||||| |||||| |||| Sbjct 33349 AGATGGCTGCTGACCGTGGAGCCTTCATCGACCAATCTCAGTCTCTAAACATCCACATGA 33408 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | ||| | ||| |||| | | ||| |||||||| ||| |||||| ||||| | Sbjct 33409 AGGAGCCTACCATGGGCAAGATCACCTCCATGCACTTCGCCGGATGGAAGCTCGGACTAA 33468 Query 55899 AGACGGGTATGTACTATCTGCGGACC 55924 ||||||| |||||||| || || ||| Sbjct 33469 AGACGGGCATGTACTACCTCCGTACC 33494 >seq13 Length=704243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||||| ||| ||||||| |||||||||||||||| Sbjct 439939 AGGCCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAACCACTGAAG 439880 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 ||||| || ||||| || || |||||||| || | ||| || |||| Sbjct 439879 AAGATACCCTCGACGGCAGCGAACGCGACAAGACGGTTCGC-AAAGGTG 439832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214262589200