Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq93 192 7e-44 seq5 181 1e-40 seq9 122 1e-22 seq44 118 1e-21 >seq93 Length=73557 Score = 192 bits (212), Expect = 7e-44 Identities = 616/948 (65%), Gaps = 22/948 (2%) Strand=Plus/Minus Query 80821 TTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTC 80880 ||||| || || || || ||| | || || || || || ||||| |||||||| | | Sbjct 32704 TTCAGATTACGCGTCACGACCTGAGTGACTTCGTGCAGCTTCTGGAAGTCGAACTCGCCA 32645 Query 80881 CCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCT 80934 | ||| || || | || || || || |||| ||||| || || ||||| Sbjct 32644 CGCTTGTAGTCGACGAACGATGGGAGAGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCA 32585 Query 80935 TCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 |||| | || |||||| ||| || ||||||| || || || ||||| || Sbjct 32584 TCAGGCGCGGTGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGA 32525 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || |||||||| |||| |||||| || |||||||| |||| | ||| |||| ||| Sbjct 32524 TTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATGAAAGGGTTACCAGTC 32465 Query 81055 TCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAAT 81114 || ||| | || ||||||||| | ||||| || | || || || |||| Sbjct 32464 TCCGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCACGCACTGTCTCGCGGCCA 32405 Query 81115 TTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT 81173 ||| || | |||| | || |||| | ||||||| |||||| | || | Sbjct 32404 CGGCCCTCCTTCTCATAGCGGTGATAGAGCTCC-TCGAACTCATCACCGTAGACGTCCGC 32346 Query 81174 GAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTT 81233 |||| | || |||||| ||||||||||| ||| ||| || | || ||| ||| Sbjct 32345 GAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTT 32286 Query 81234 CATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATC 81293 |||||| || |||||||| || ||| ||| ||||||||| || |||| || | Sbjct 32285 CATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTT 32226 Query 81294 ACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 || ||||| || | || | ||| | | | || || ||||| ||||| || || Sbjct 32225 GCCGTGGTTCTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTA 32166 Query 81354 CACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGC 81407 | ||||| | | ||| |||| ||||||||||| |||||| || ||||| Sbjct 32165 GATGGCGAAAG-CACCT--GGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTT 32109 Query 81408 GTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACG 81467 ||| | ||||| | ||| || |||| ||||| || |||||| || || | || Sbjct 32108 GTTGTAGACACGGAGCATGGGAATGAGACCATTCGATGTACCGTTTGTGCCACCAATGTA 32049 Query 81468 CGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAA 81525 || || |||| || | | ||| ||| ||||| || || || | ||| || Sbjct 32048 GGAGCCGGTGGCACGAATGCGGTGCACGTTG--AGACCAATACCGCCAGCGGTCTTGGAG 31991 Query 81526 ATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCA 81585 ||| |||||| || | || || || ||||| || ||||| |||| |||||||| Sbjct 31990 ATCAAAGCACATGTCTTAAGTGTATCGTAGATTCCATCAATGCTGTCTTCCTTCATGTCG 31931 Query 81586 AGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTC 81645 | | ||| ||| ||||||||||| | | || || ||||| ||||| |||| Sbjct 31930 ATGAGGAAGCAGGACGACATCTGAGGCGATGGGGTACCCGCGTTGAAAAGTGTAGGGGAA 31871 Query 81646 GCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCG 81705 ||||| |||| || | ||||| ||| || || || || | ||||| Sbjct 31870 GCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATATCC 31811 Query 81706 TCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCGT 81752 || ||||| || |||| ||| || ||||| | ||||| || |||||| Sbjct 31810 TCGCCGTGGATGCCGACAGCCACGCGCATCAGCATGTGTTGTGGGCGT 31763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||||||||| || || |||||| ||| | |||||| || Sbjct 33493 GTACGGAGGTAGTACATGCCCGTCTTTAGTCCGAGCTTCCATCCGGCGAAGTGCATGGAG 33434 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||| ||||||||||| || |||| Sbjct 33433 GTGATCTTGCCCATGGTAGGCTCCTTCATGTGGATGTTTAGAGACTGAGATTGGTCGATG 33374 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT 80189 || || ||||| || || ||||| | |||||| Sbjct 33373 AAGGCTCCACGGTCAGCAGCCATCTGAATAAT 33342 >seq5 Length=873697 Score = 181 bits (200), Expect = 1e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||| ||||| || |||||||| ||||| |||| ||||| ||| | ||| | Sbjct 39324 ACCGGCAAAACTATCACGCTTGAGGTCGAGTCGTCCGATACCATTGACAATGTTAAGTCG 39265 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| ||||| |||||||| | || || || || ||| Sbjct 39264 AAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39205 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| ||||||||| | ||||| ||| |||| ||||| || ||||| ||| Sbjct 39204 CAGCTCGAGGATGGCCGTACCCTATCCGACTACAATATCCAGAAGGAGTCTACTCTGCAT 39145 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || |||||||| Sbjct 39144 CTCGTCTTACGCCTGCGCGGTGG 39122 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || |||||||| ||||| || ||||| |||||| Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCG 39061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || |||||||| |||||||| || |||||||| ||| Sbjct 39060 GATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAG 39001 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| ||||| | || |||| ||||| || | ||||| ||| Sbjct 39000 CAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAAT 38941 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| || || | || | ||||| || ||||| Sbjct 38940 ATTCAGAAGGAATCCACGCTCCACTTGGTGCTCCGTCTCCGTGGTGG 38894 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || | |||||||| || | Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || | || || || ||||||||||| ||||| || |||||| Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || || || || | | | || || | ||||| || Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || || || | || | |||||||| || ||||| Sbjct 38712 ATTCAGAAGGAGTCTACGCTGCACTTGGTGCTTCGTCTTCGTGGCGGACA 38663 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| |||||||| || || ||||| ||||| || | || | || | ||| Sbjct 39608 ACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGAGC 39549 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || ||||| || || |||||||| | || || || || ||| Sbjct 39548 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39489 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| |||||| | | || || || |||| ||||| || ||||||||| Sbjct 39488 CAGCTCGAGGATGGCCGTACCTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 39429 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||||||||| Sbjct 39428 CTTGTCCTCCGCCTTCGCGGTGG 39406 >seq9 Length=754770 Score = 122 bits (134), Expect = 1e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| || ||| Sbjct 276301 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATT 276242 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || ||||| | ||||| || |||| |||||| Sbjct 276241 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAA 276182 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| | ||| | ||||| || ||||| Sbjct 276181 TCGACGCTTCACTTGGTCCTCCGTCTCCGTGGTGG 276147 >seq44 Length=299893 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27491 AAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| ||||||||||| ||||| || |||||||||||||| || || || || |||| Sbjct 197931 AAATTGTAGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCCGGCAAGC 197990 Query 27551 AACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATC 27610 | |||||||||| ||| ||||| | ||||| || |||| ||||| || || ||||| Sbjct 197991 AGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACT 198050 Query 27611 TAGTCTTGCGTCTTCGCGGTGGA 27633 | ||| | ||||| || |||||| Sbjct 198051 TGGTCCTCCGTCTGCGTGGTGGA 198073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308589264480