Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 125 6e-24 seq44 95.1 1e-14 >seq5 Length=873697 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||||||| | || || | || || ||| || | Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || || |||||||| || ||||| ||||| || || Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || ||||| |||||||| || ||| | || || |||||| Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || ||||| | ||| | || || || Sbjct 38712 ATTCAGAAGGAGTCTACGCTGCACTTGGTGCTTCGTCTTCGTGGCGG 38666 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| |||| || || || ||||| |||| ||| |||| || | || || Sbjct 39608 ACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGAGC 39549 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| |||||||| || |||||||| ||||| || || | ||||||||| Sbjct 39548 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39489 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || | ||| | |||||||||||||| || ||||||||||| | ||| Sbjct 39488 CAGCTCGAGGATGGCCGTACCTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 39429 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || | || ||||| || Sbjct 39428 CTTGTCCTCCGCCTTCGCGGTGGTAT 39403 >seq44 Length=299893 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||| |||||| || ||||| || || || || |||||| | || | |||||||| Sbjct 197928 AATAAATTGTAGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCCGGCA 197987 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || || || ||| | ||||| |||||||| || |||||||||||| | | Sbjct 197988 AGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTC 198047 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGG 27214 | ||||| | ||| |||| ||||| Sbjct 198048 ACTTGGTCCTCCGTCTGCGTGGTGG 198072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917019134080