Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq5 163 7e-35
seq93 132 1e-25
seq9 105 2e-17
seq44 102 2e-16
>seq5
Length=873697
Score = 163 bits (180), Expect = 7e-35
Identities = 172/225 (76%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| || || ||||| || || ||||| || || | || ||
Sbjct 38671 ACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGT 38730
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
||| || ||||||||||| || || ||||||||||| || || |||||||| |||| ||
Sbjct 38731 CCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCC 38790
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069
|||||||| |||||||| ||| ||||| |||||||| || ||| |||||||||
Sbjct 38791 CTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATC---GCTCGATTCAACCTC 38847
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| ||||| ||||| || ||||||||||| || || | ||||||
Sbjct 38848 CAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
Score = 161 bits (178), Expect = 2e-34
Identities = 155/199 (78%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | |||||||| |||||||| ||||| || |||||||| ||||| | | |||
Sbjct 39412 CGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTA 39471
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || ||||||||||| |||||||| | ||| || || || || |||| |||
Sbjct 39472 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCT 39531
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| ||||| ||||| || || ||||||||
Sbjct 39532 TCCTTGTCCTGGATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGG 39591
Query 211074 GTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 39592 GTGATAGTCTTACCGGTGA 39610
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| || | || ||| || || ||||| ||||| || ||||| || || || | |||||
Sbjct 39128 CGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTA 39187
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || ||||||||||| |||||||| | ||| || || || || |||| ||
Sbjct 39188 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCC 39247
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || || || || ||||| || || || ||||| ||
Sbjct 39248 TCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGC 39307
Query 211074 GTGATCGTCTTTCCCGT 211090
||||| || || || ||
Sbjct 39308 GTGATAGTTTTGCCGGT 39324
>seq93
Length=73557
Score = 132 bits (146), Expect = 1e-25
Identities = 195/275 (71%), Gaps = 6/275 (2%)
Strand=Plus/Minus
Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150
||||| ||||||||||| | |||| |||||| ||||| ||||| || | ||
Sbjct 32524 TTCTTCTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAAAGCATGAAAGGGTTACCA 32468
Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210
||| | |||||| |||| ||| || |||||||| |||||| || || |||| |
Sbjct 32467 GTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCACGCACTGTCTCGCGG 32408
Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270
| || || ||||| || | |||||||||||||| || || ||||| ||
Sbjct 32407 CCACGGCCCTCCTTCTCATAGCGGTGATAGAGCTCCTCGAACTCATCACCGTAGACGTCC 32348
Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330
|||| ||||||||||| |||||||| | || |||||| |||| ||||| ||| ||
Sbjct 32347 GCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGC 32288
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
||||||||||| || | | |||| | || |||||
Sbjct 32287 TTCATGAAGAGATCGGGGATCCACAGAGCGTAGAA 32253
>seq9
Length=754770
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||| || || || || |||||||| || || | ||||| | || ||
Sbjct 276162 AGGACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 276221
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || ||||| || ||||| || |||| || |||||||||
Sbjct 276222 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 276281
Query 211023 TGGATCTT 211030
||||||||
Sbjct 276282 TGGATCTT 276289
>seq44
Length=299893
Score = 102 bits (112), Expect = 2e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||| || ||||| || |||||||| || || | ||||| | |||||
Sbjct 198057 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 197998
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| ||||||||||| || || ||||| || |||| || ||||||||
Sbjct 197997 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 197939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159148227684710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |