Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 163 7e-35 seq93 132 1e-25 seq9 105 2e-17 seq44 102 2e-16 >seq5 Length=873697 Score = 163 bits (180), Expect = 7e-35 Identities = 172/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || || ||||| || || ||||| || || | || || Sbjct 38671 ACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGT 38730 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| || ||||||||||| || || ||||||||||| || || |||||||| |||| || Sbjct 38731 CCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCC 38790 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 |||||||| |||||||| ||| ||||| |||||||| || ||| ||||||||| Sbjct 38791 CTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATC---GCTCGATTCAACCTC 38847 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || ||||||||||| || || | |||||| Sbjct 38848 CAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 161 bits (178), Expect = 2e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | |||||||| |||||||| ||||| || |||||||| ||||| | | ||| Sbjct 39412 CGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTA 39471 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| |||||||| | ||| || || || || |||| ||| Sbjct 39472 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCT 39531 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||| ||||| || || |||||||| Sbjct 39532 TCCTTGTCCTGGATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGG 39591 Query 211074 GTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 39592 GTGATAGTCTTACCGGTGA 39610 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | || ||| || || ||||| ||||| || ||||| || || || | ||||| Sbjct 39128 CGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTA 39187 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||| |||||||| | ||| || || || || |||| || Sbjct 39188 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCC 39247 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || || ||||| || || || ||||| || Sbjct 39248 TCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGC 39307 Query 211074 GTGATCGTCTTTCCCGT 211090 ||||| || || || || Sbjct 39308 GTGATAGTTTTGCCGGT 39324 >seq93 Length=73557 Score = 132 bits (146), Expect = 1e-25 Identities = 195/275 (71%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 ||||| ||||||||||| | |||| |||||| ||||| ||||| || | || Sbjct 32524 TTCTTCTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAAAGCATGAAAGGGTTACCA 32468 Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210 ||| | |||||| |||| ||| || |||||||| |||||| || || |||| | Sbjct 32467 GTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCACGCACTGTCTCGCGG 32408 Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270 | || || ||||| || | |||||||||||||| || || ||||| || Sbjct 32407 CCACGGCCCTCCTTCTCATAGCGGTGATAGAGCTCCTCGAACTCATCACCGTAGACGTCC 32348 Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330 |||| ||||||||||| |||||||| | || |||||| |||| ||||| ||| || Sbjct 32347 GCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGC 32288 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||||||||||| || | | |||| | || ||||| Sbjct 32287 TTCATGAAGAGATCGGGGATCCACAGAGCGTAGAA 32253 >seq9 Length=754770 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || || || || |||||||| || || | ||||| | || || Sbjct 276162 AGGACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 276221 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| || |||| || ||||||||| Sbjct 276222 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 276281 Query 211023 TGGATCTT 211030 |||||||| Sbjct 276282 TGGATCTT 276289 >seq44 Length=299893 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| || |||||||| || || | ||||| | ||||| Sbjct 198057 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 197998 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| ||||||||||| || || ||||| || |||| || |||||||| Sbjct 197997 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 197939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148227684710