Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 140 8e-28 seq121 93.3 1e-13 seq44 86.0 1e-11 >seq5 Length=873697 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||| || ||||| || || || |||| |||||||||| ||| || Sbjct 39412 CGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTA 39471 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| | || || || ||||| ||||| ||| Sbjct 39472 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCT 39531 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||| |||||||| | ||||| || | Sbjct 39532 TCCTTGTCCTGGATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGG 39591 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 39592 GTGATAGTCTTACCGGT 39608 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| |||||||| || || | |||||| || | | ||| | ||||||| Sbjct 38909 AGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCT 38968 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| |||||| |||||||| || || ||||| || || || || ||||| ||||| || Sbjct 38969 TCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCC 39028 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || |||||||| || || | ||||| || | ||| || ||| Sbjct 39029 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTC 39088 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 39089 TTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || || || || | ||||| || | | || Sbjct 38671 ACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGT 38730 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| ||||| || |||||||||||||| || || ||||| || ||||| || Sbjct 38731 CCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCC 38790 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| || || |||||||| || | ||| || || || Sbjct 38791 CTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACCTCCAA 38850 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| || | ||| | ||||| Sbjct 38851 GGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 >seq121 Length=33212 Score = 93.3 bits (102), Expect = 1e-13 Identities = 185/271 (68%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 ||||||||||||| | ||||| ||| | | || ||| |||||| | | || Sbjct 2887 TTATATTTAATATACGCATTATTTTCAGGTTTAGTTGGAACTGCTTTTTCTGTATTAATT 2946 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTACAA 7562 || ||||| | | | || ||| ||| |||||| || |||| ||| | || || Sbjct 2947 AGATTAGAGCTGTCAGGACCAGGTGTTCAGTATATTGC-TGATAAT---CAATTATATAA 3002 Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 | ||| ||||| || ||||| || | |||||||||||| | |||||||| | | | || Sbjct 3003 CAGTATAATTACTGCTCATGCTATTATAATGATTTTCTTTATGGTTATGCCTGCTTTAAT 3062 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 || || || || |||| || |||| ||| | | || | |||||||||| || || Sbjct 3063 TGGGGGATTTGGTAATTTCTTACTTCCATTAGGGTTAGGAGGACCTGATATGGGATTCCC 3122 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTA 7713 || ||||| ||||| |||| | |||| || Sbjct 3123 TAGACTTAATAATATTAGTTACTTATTATTA 3153 >seq44 Length=299893 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || |||| ||||| |||| | || | ||||| Sbjct 198057 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 197998 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || || ||||| || ||||| || ||||||||| Sbjct 197997 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 197938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527319056276