Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq5 140 8e-28
seq121 93.3 1e-13
seq44 86.0 1e-11
>seq5
Length=873697
Score = 140 bits (154), Expect = 8e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | |||||||| || ||||| || || || |||| |||||||||| ||| ||
Sbjct 39412 CGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTA 39471
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || |||||||| || |||||||| | || || || ||||| ||||| |||
Sbjct 39472 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCT 39531
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| || ||||| |||||||| | ||||| || |
Sbjct 39532 TCCTTGTCCTGGATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGG 39591
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| ||||| || ||
Sbjct 39592 GTGATAGTCTTACCGGT 39608
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| |||||||| || || | |||||| || | | ||| | |||||||
Sbjct 38909 AGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCT 38968
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|||| |||||| |||||||| || || ||||| || || || || ||||| ||||| ||
Sbjct 38969 TCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCC 39028
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || |||||||| || || | ||||| || | ||| || |||
Sbjct 39029 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTC 39088
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | ||| | |||||
Sbjct 39089 TTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Score = 116 bits (128), Expect = 9e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || || || || || || | ||||| || | | ||
Sbjct 38671 ACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGT 38730
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || ||||| ||||| || |||||||||||||| || || ||||| || ||||| ||
Sbjct 38731 CCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCC 38790
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| || || |||||||| || | ||| || || ||
Sbjct 38791 CTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACCTCCAA 38850
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | ||| || | ||| | |||||
Sbjct 38851 GGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
>seq121
Length=33212
Score = 93.3 bits (102), Expect = 1e-13
Identities = 185/271 (68%), Gaps = 5/271 (2%)
Strand=Plus/Plus
Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503
||||||||||||| | ||||| ||| | | || ||| |||||| | | ||
Sbjct 2887 TTATATTTAATATACGCATTATTTTCAGGTTTAGTTGGAACTGCTTTTTCTGTATTAATT 2946
Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTACAA 7562
|| ||||| | | | || ||| ||| |||||| || |||| ||| | || ||
Sbjct 2947 AGATTAGAGCTGTCAGGACCAGGTGTTCAGTATATTGC-TGATAAT---CAATTATATAA 3002
Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622
| ||| ||||| || ||||| || | |||||||||||| | |||||||| | | | ||
Sbjct 3003 CAGTATAATTACTGCTCATGCTATTATAATGATTTTCTTTATGGTTATGCCTGCTTTAAT 3062
Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682
|| || || || |||| || |||| ||| | | || | |||||||||| || ||
Sbjct 3063 TGGGGGATTTGGTAATTTCTTACTTCCATTAGGGTTAGGAGGACCTGATATGGGATTCCC 3122
Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTA 7713
|| ||||| ||||| |||| | |||| ||
Sbjct 3123 TAGACTTAATAATATTAGTTACTTATTATTA 3153
>seq44
Length=299893
Score = 86.0 bits (94), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| || || || || || |||| ||||| |||| | || | |||||
Sbjct 198057 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 197998
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||||||||| || || ||||| || ||||| || |||||||||
Sbjct 197997 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 197938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192527319056276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |