Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 104 5e-17 seq44 84.2 5e-11 >seq5 Length=873697 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || |||||||| || | | || || || ||||| | Sbjct 38686 CAAG-TGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCA 38744 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||||||||| | ||||||||| | | || || ||||| ||||| | Sbjct 38745 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGA 38804 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | | | || ||| || || || | || || || | Sbjct 38805 TCTTCGATTTGACGTTATCGATGGTATC---GCTCGATTCAACCTCCAAGGTGATGGTCT 38861 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| ||||||||||||||||||| |||||| Sbjct 38862 TGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||||||||||||||| ||||| || |||||||||||||||| || || | ||||| Sbjct 39420 GAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGGCCATC 39479 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | |||||| || | | || |||||||| || Sbjct 39480 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCTTCCTTGTC 39539 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || || | || | ||||||| ||| || || || || ||||| Sbjct 39540 CTGGATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGGGTGATAGT 39599 Query 152072 TTTGCCCGTGA 152082 || || |||| Sbjct 39600 CTTACCGGTGA 39610 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| ||||||||||| || ||||| ||||| |||| || || | ||||| || Sbjct 39139 GACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCATCCTC 39198 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || ||||||||||| | | |||||| || | || || || ||||| || || Sbjct 39199 GAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTG 39258 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || ||| | || | | | || || ||| || ||||| || |||||||| Sbjct 39259 AATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGATAGTTTT 39318 Query 152075 GCCCGT 152080 ||| || Sbjct 39319 GCCGGT 39324 >seq44 Length=299893 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || ||||| || ||||||||||| |||| | || | ||||| Sbjct 198058 GAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATC 197999 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||||||||| | ||||||||||| | || || ||||| || Sbjct 197998 CTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 197939 Query 152012 TTGAATTTTTT 152022 | ||||| || Sbjct 197938 TACAATTTATT 197928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153817045034434