Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 149 1e-30 seq9 107 4e-18 seq13 96.9 7e-15 seq44 95.1 3e-14 >seq5 Length=873697 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| || | ||| || || || ||||||||||||| Sbjct 38666 CCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAG 38725 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | || || || || ||||| || || ||||| | ||| || |||||| ||| Sbjct 38726 AGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGA 38785 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| | ||| ||| ||||||| || || | ||| || Sbjct 38786 ATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACC 38845 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 38846 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | |||| ||| || || || |||||||| | Sbjct 38893 ACCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGA 38952 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| |||| || || || || || || | |||||| || || || Sbjct 38953 GAGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGG 39012 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| | || ||| | ||||| || ||||| | || || Sbjct 39013 GATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCAC 39072 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 39073 CTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 136 bits (150), Expect = 8e-27 Identities = 157/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| || ||||| || || ||||| | || || || ||||||||||| || | Sbjct 39405 ACCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 39464 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| || || || ||||| |||||||| || || || || | Sbjct 39465 CAAG-GTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGG 39523 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| || |||||||| |||||| ||||| |||||| | ||||| ||||| || | || Sbjct 39524 GAATGCCTTCCTTGTCCTGGATC-TTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCC 39582 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| ||||| |||||||| || Sbjct 39583 ACCTCGAGGGTGATAGTCTTACCGGT 39608 Score = 120 bits (132), Expect = 6e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| | || ||||| | || || || ||||| |||||||| | Sbjct 39121 ACCACCGCGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 39180 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||| |||||||| || || || || ||| Sbjct 39181 TAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGG 39240 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || || | || || || || || | ||||| Sbjct 39241 AATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGAC 39300 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| || || || |||| Sbjct 39301 CTCAAGCGTGATAGTTTTGCCGGTCA 39326 >seq9 Length=754770 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| ||| || |||||||||||||| | Sbjct 276146 ACCACCACGGAGACGGAGGACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGA 276205 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| || |||| || || ||||| || Sbjct 276206 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGG 276265 Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015 ||| ||||||||||| |||||||| Sbjct 276266 AATGCCCTCCTTGTCCTGGATCTT 276289 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| ||||| |||| | |||| || || |||||||||| || ||||| | Sbjct 292485 ACACCACCCTCGAAAGTCTTGATGGCCTTTGACAGGGCACCGAGAGAATCACGGTCGAGG 292426 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||| ||||| ||||||||||| | ||||| | |||||| |||| ||| || Sbjct 292425 TAGTTGGTGGGCTCGTCAAGAACGATCAAATGGGGACGCTGCCAT-GAGCAAGCGGAGAG 292367 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATG 315833 |||| ||| | || ||||| ||||| ||||| ||||| || || Sbjct 292366 GACGACCTTGACACGCTGACCACCGGACAGACCACGCATGCGGGAGTG 292319 >seq13 Length=704243 Score = 96.9 bits (106), Expect = 7e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| |||| || ||| || |||| ||| | || ||| | |||||| | Sbjct 440049 ATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTCTGCCTTGCGCT 440108 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||| ||| |||||| | ||||| || || ||||| || || ||| | Sbjct 440109 CTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTGCCGACCGTCTG 440168 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || |||| || || || || ||||| || ||| |||||||||| || |||||| Sbjct 440169 CTCTTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCGACTTCATGGAG 440228 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 || || | || || || ||||||||||| ||||| || |||| || || | | Sbjct 440229 AATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAGAAG 440288 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 440289 GCTGGTGT 440296 >seq44 Length=299893 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | || || || |||||||||||||| | Sbjct 198072 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 198013 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || ||||| ||||| | ||| || ||||| ||| Sbjct 198012 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGA 197953 Query 282993 ATACCCTCCTTGTCT 283007 || |||||||||||| Sbjct 197952 ATGCCCTCCTTGTCT 197938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735793518116