Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 143 6e-29 seq9 89.7 1e-12 seq44 87.8 4e-12 >seq5 Length=873697 Score = 143 bits (158), Expect = 6e-29 Identities = 158/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| |||||||| || || || |||||| | ||||| ||| ||| Sbjct 38889 CAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC--- 38833 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| ||||||||| ||||| || ||||| || || || || || |||||| Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || ||||||||||| || |||||||| ||||| || ||||| || | || || ||| Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || ||||| |||| Sbjct 38712 ATTCAGAAGGAGTCTACGCTGCA-CTTG 38686 Score = 143 bits (158), Expect = 6e-29 Identities = 146/188 (78%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| |||||||| ||||| ||||| || Sbjct 39610 TCACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGA 39551 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| ||||| || || || || ||||| || | ||||||||||| | Sbjct 39550 GCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCA 39491 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 | |||||||| ||||| | || |||| ||||||| ||| |||| || || || || || Sbjct 39490 AGCAGCTCGAGGATGGCCGTAC-CTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTT 39432 Query 178122 CATCTTGT 178129 |||||||| Sbjct 39431 CATCTTGT 39424 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || || || ||||||||||| || || Sbjct 39117 CAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCGGAT 39058 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || |||||||| || |||||| Sbjct 39057 ACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAGCAA 38998 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||| | |||||||| | ||||| | || || || | Sbjct 38997 CGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAATATT 38938 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 38937 CAGAAGGAATCCACGCTCCA-CTTG 38914 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| ||||| || ||||| || || || ||||| || || || || Sbjct 39324 ACCGGCAAAACTATCACGCTTGAGGTCGAGTCGTCCGATACCATTGACAATGTTAAGTCG 39265 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || || || || ||||| || | ||||||||||| || Sbjct 39264 AAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39205 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | || || |||| || || |||| || || || || |||||| Sbjct 39204 CAGCTCGAGGATGGCCGTACCCTATCCGACTACAATATCCAGAAGGAGTCTACTCTGCAT 39145 Query 178125 CTTGTTTT 178132 || || || Sbjct 39144 CTCGTCTT 39137 >seq9 Length=754770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || ||||||||||| || || || |||||||| || Sbjct 276289 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAG 276230 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || |||| || ||| |||| || ||||| || || || Sbjct 276229 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAATCGACGCTTCA- 276171 Query 178125 CTTG 178128 |||| Sbjct 276170 CTTG 276167 >seq44 Length=299893 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || |||||||||||||| || |||||||| Sbjct 197939 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAG 197998 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | || || |||| || ||| |||| || || || || || || |||| Sbjct 197999 GATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCA-CTTG 198052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727282607276