Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 6e-29
seq9 89.7 1e-12
seq44 87.8 4e-12
>seq5
Length=873697
Score = 143 bits (158), Expect = 6e-29
Identities = 158/208 (76%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || |||||||| |||||||| || || || |||||| | ||||| ||| |||
Sbjct 38889 CAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC--- 38833
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| |||||||| ||||||||| ||||| || ||||| || || || || || ||||||
Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || ||||||||||| || |||||||| ||||| || ||||| || | || || |||
Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
| || || || || || ||||| ||||
Sbjct 38712 ATTCAGAAGGAGTCTACGCTGCA-CTTG 38686
Score = 143 bits (158), Expect = 6e-29
Identities = 146/188 (78%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 39610 TCACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGA 39551
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| ||||| || || || || ||||| || | ||||||||||| |
Sbjct 39550 GCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCA 39491
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121
| |||||||| ||||| | || |||| ||||||| ||| |||| || || || || ||
Sbjct 39490 AGCAGCTCGAGGATGGCCGTAC-CTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTT 39432
Query 178122 CATCTTGT 178129
||||||||
Sbjct 39431 CATCTTGT 39424
Score = 123 bits (136), Expect = 6e-23
Identities = 151/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || | || || || || || || ||||||||||| || ||
Sbjct 39117 CAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCGGAT 39058
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||||||||| || || || |||||||| || ||||||
Sbjct 39057 ACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAGCAA 38998
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||| | |||||||| | ||||| | || || || |
Sbjct 38997 CGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAATATT 38938
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || ||||| || || || ||||
Sbjct 38937 CAGAAGGAATCCACGCTCCA-CTTG 38914
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || ||||| ||||| || ||||| || || || ||||| || || || ||
Sbjct 39324 ACCGGCAAAACTATCACGCTTGAGGTCGAGTCGTCCGATACCATTGACAATGTTAAGTCG 39265
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || || || || || ||||| || | ||||||||||| ||
Sbjct 39264 AAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39205
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| ||||| | || || |||| || || |||| || || || || ||||||
Sbjct 39204 CAGCTCGAGGATGGCCGTACCCTATCCGACTACAATATCCAGAAGGAGTCTACTCTGCAT 39145
Query 178125 CTTGTTTT 178132
|| || ||
Sbjct 39144 CTCGTCTT 39137
>seq9
Length=754770
Score = 89.7 bits (98), Expect = 1e-12
Identities = 95/124 (77%), Gaps = 1/124 (1%)
Strand=Plus/Minus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || || ||||||||||| || || || |||||||| ||
Sbjct 276289 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAG 276230
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | || || |||| || ||| |||| || ||||| || || ||
Sbjct 276229 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAATCGACGCTTCA- 276171
Query 178125 CTTG 178128
||||
Sbjct 276170 CTTG 276167
>seq44
Length=299893
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/115 (77%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || || || ||||||||||| || |||||||||||||| || ||||||||
Sbjct 197939 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAG 197998
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||||| | || || |||| || ||| |||| || || || || || || ||||
Sbjct 197999 GATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCA-CTTG 198052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203727282607276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |