Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9 141 9e-29 seq5 134 1e-26 seq44 127 2e-24 >seq9 Length=754770 Score = 141 bits (156), Expect = 9e-29 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || ||||| |||||||| ||||| ||||||||| Sbjct 276147 CCACCACGGAGACGGAGGACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAG 276206 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||||||||| ||||||||||| ||||||| |||| Sbjct 276207 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 276266 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 276267 ATGCCCTCCTTGTCCTGGATCTT 276289 >seq5 Length=873697 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| |||||||| ||||||||||||||| ||||| ||| Sbjct 38666 CCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAG 38725 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || ||||| || || ||||| || || ||||| ||||| | ||| Sbjct 38726 AGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGA 38785 Query 41756 ACGCTCTCCTTGTCCATGATTT----TTTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810 | || ||||||||| ||| | |||| | | | ||| | || |||||||| | Sbjct 38786 ATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATG-----GTATCGCTCGATT 38840 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 38841 CAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || ||||| || |||||||| || ||||||||| || || |||||||| Sbjct 39122 CCACCGCGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGAT 39181 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||||||||| |||| |||||| || || | ||| Sbjct 39182 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGA 39241 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | || ||| |||||| || Sbjct 39242 ATGCCCTCCTTGTCC-TGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGAC 39300 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | ||| || ||||| || |||| Sbjct 39301 CTCAAGCGTGATAGTTTTGCCGGTCA 39326 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || || ||||||||| ||||| || ||||| Sbjct 39406 CCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAC 39465 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || |||||||||||||||||||| |||| |||||| || || | |||| Sbjct 39466 AAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGA 39525 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| ||| | | | ||||| ||||||||| Sbjct 39526 ATGCCTTCCTTGTCCTGGATCTTGCTCTT-TACGTTGTCGATCGTGTCTGACGACTCCAC 39584 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 39585 CTCGAGGGTGATAGTCTTACCGGT 39608 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || |||||| ||||||||||| || ||||| ||| Sbjct 38894 CCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAG 38953 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || || | ||||||||| ||||| || || || || || || | || Sbjct 38954 AGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGG 39013 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | | ||| | | | || || |||||||| Sbjct 39014 ATACCCTCCTTATCC-TGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCAC 39072 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || || |||| ||||| |||||||||||||| Sbjct 39073 CTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 >seq44 Length=299893 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||||||| Sbjct 198072 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 198013 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| || || ||||| ||||||| |||| Sbjct 198012 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGA 197953 Query 41756 ACGCTCTCCTTGTCCATGATTTTTT 41780 | || ||||||||| | |||| || Sbjct 197952 ATGCCCTCCTTGTCTACAATTTATT 197928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302532184800