Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 163 6e-35 seq112 136 8e-27 >seq1 Length=1805414 Score = 163 bits (180), Expect = 6e-35 Identities = 318/462 (69%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 230182 CGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 230241 |||||| |||||| | ||| || || ||| | || || || ||| ||| ||| Sbjct 289788 CGTCTCATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 289847 Query 230242 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 230301 || ||||| ||| || ||||||| |||||| | || |||||| |||| Sbjct 289848 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 289907 Query 230302 CGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAA 230360 || |||||||| | || || | | |||| | | || | || | |||| ||||| Sbjct 289908 CGTGACGAGGGCATGCA-CACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAA 289966 Query 230361 GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTT 230420 || | || |||| ||| | || ||||| || ||||| || || | ||| | ||||| Sbjct 289967 GCCATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTT 290026 Query 230421 CATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGT 230479 | ||| ||||| | || || ||| ||| | ||||||||||| | || ||| | |||| Sbjct 290027 CCTTTCAGACGCCCTACCCTG-CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGT 290085 Query 230480 ACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGT-GTACAAC 230538 ||||||| ||||| || |||||| | | | ||||| || || || |||| |||||| Sbjct 290086 ACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCACTCGGCCAC-AGCAAGTACTACAAC 290144 Query 230539 TCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTC 230598 | | |||||||| | || |||||| ||| || || || ||||| ||||||||| Sbjct 290145 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTC 290204 Query 230599 GAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAAG 230640 || ||||| || ||||||| |||| | ||||||| ||| || Sbjct 290205 GAGAAGCGCGTAGGTGACTACCAGAAGGCTGGTGTCATGGAG 290246 >seq112 Length=1778705 Score = 136 bits (150), Expect = 8e-27 Identities = 300/442 (68%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 230261 |||||| ||||| | || ||||| ||| |||||||| ||||| ||| || Sbjct 1416733 TGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGG 1416792 Query 230262 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCA 230321 | ||||| |||||| | ||||| ||| ||||| || |||||||| | || || Sbjct 1416793 CCTCATGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCA-CA 1416851 Query 230322 ACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCA 230380 | | || || | || | || | |||| ||||||| | || |||| ||| Sbjct 1416852 CCGACTTTGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCC 1416911 Query 230381 AACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCAT 230440 | || ||||| || || || || || | ||| | |||||| | | ||||| | || | Sbjct 1416912 ACCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCT 1416971 Query 230441 GTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 | ||| ||| | ||||||||||| | || ||| | ||||||||||| || || || ||| Sbjct 1416972 G-CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGAC 1417030 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGT-GTACAACTCTAAGAACCCCTTTGCATT 230558 || | | | ||||| || || || |||| ||||| | | |||||||| | || Sbjct 1417031 CGTCTACTCCTCGCACTCGGCCAC-AGCAAGTACTACAATGCCACCAACCCCTTCGACTT 1417089 Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||| ||| || || || ||||| ||||||||||| ||||| || ||||||| Sbjct 1417090 CATGGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGACTA 1417149 Query 230619 TCAGAGGCCTGGTGTGATGAAG 230640 || | | ||||||| ||| || Sbjct 1417150 CCAAAAGGCTGGTGTCATGGAG 1417171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820381250210