Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 145 8e-30 seq112 122 9e-23 >seq1 Length=1805414 Score = 145 bits (160), Expect = 8e-30 Identities = 555/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||||| || ||||| ||||| || ||||| | || || || |||||| Sbjct 290227 TGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCC 290168 Query 16736 ATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAA 16794 ||||| || || || || || || | | || || || || ||| || || || Sbjct 290167 ATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCT-GTGGCCGAGTGCGAGGAGTAG 290109 Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-C 16853 | || || || || || || || |||||||| | | | |||||| || | ||| | Sbjct 290108 GCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 290049 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 | | || || || || | | || |||||| || | || |||||| | || || | Sbjct 290048 GCAG-GGTAGGGCGTCTGAAAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGAT-C 289991 Query 16914 TAGCA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 | | || | || || || | | |||||| || || ||| ||||| Sbjct 289990 TGGTGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATACAGGCGAAG 289931 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||| || | |||||||| | | || || ||||| || || || | ||||||||| Sbjct 289930 TCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATC 289871 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || || ||||| | ||| || || ||||||||||| ||||| ||||| || |||||| Sbjct 289870 AGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCG 289811 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | ||| || ||||| | || | || | |||| | | || | ||||| || Sbjct 289810 ACAGCTGCGAAGGCGATGAGACGGCAGCCGAAGGTCGATGCGTCGTCGCTGATCCACTTT 289751 Query 17153 TGCACCCACTCGGCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT- 17210 | |||| | ||| || |||| ||||| || | || || || ||||| | | Sbjct 289750 AGTGCCCAGTTGGCCTTCTTGCGG-ATGCACGGGATATTGTCGATAGCGTTAAAGAGGTA 289692 Query 17211 TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGT 17270 | | || | | | ||| | || || || ||||| ||||| ||| | ||||||| Sbjct 289691 TGTGCGTTGGC-GAGGTTCGCTGATGTAGGTGTCGATAAGTAGTGAGTAGGTCTCGGAGT 289633 Query 17271 GTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTT 17330 | || |||||||| ||||| || ||||| ||||| || || || | ||||| || | Sbjct 289632 GGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGATTTGCACCT 289573 Query 17331 C--CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 | ||| || ||||| || | || || ||||| ||||||||||| |||||||| || Sbjct 289572 CGCCAC-TA-AATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGATGCGGCGAAGAA 289515 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC----GCCAGTCCT 17444 || | | ||| |||||| || ||||| | || |||| |||||| | Sbjct 289514 GGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCATTGAG-ACGCTTGTTCCAGTCGT 289456 Query 17445 TTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTAT 17504 | |||||| || | ||| | || || | ||||| || ||| ||||||| || | Sbjct 289455 GCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTCTGCCTTCTTGT 289396 Query 17505 ACATATTCCAAAT 17517 |||| | ||| || Sbjct 289395 ACATCTGCCATAT 289383 >seq112 Length=1778705 Score = 122 bits (134), Expect = 9e-23 Identities = 550/855 (64%), Gaps = 19/855 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | ||||| || ||||| ||||| || ||||| | || || || |||| Sbjct 1417154 TTTGGTAGTCACCTACGCGCTTCTCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCT 1417095 Query 16734 CCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATT 16792 ||||||| || || || || || || | | || || || || ||| || || | Sbjct 1417094 CCATGAAGTCGAAGGGGTTGGTGGCATTGTAGTACTTGCT-GTGGCCGAGTGCGAGGAGT 1417036 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | | || || ||||| || || || |||||||| | | | |||||| || | ||| Sbjct 1417035 AGACGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGT 1416976 Query 16853 -CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 || | || || || |||| | || |||||| || | || || || | || || Sbjct 1416975 GCGCAG-GGCAGGGCGTCCGATAGGAACTCTTGCTCGATCTCGACGGCCTCGGTGATGAT 1416917 Query 16912 ACTAGCA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 || | || | || || || | | |||||| || || || || | Sbjct 1416916 -CTGGTGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCAA 1416858 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 | ||| || | |||||||| | ||| || || ||||| || || | ||||||| Sbjct 1416857 AGTCGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCA 1416798 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | || || ||||| | ||| || || || ||||| || || || ||||| ||||||| Sbjct 1416797 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCT 1416738 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATT 17150 | || | ||| || ||||| | || | || | |||| | | || | ||||| | Sbjct 1416737 CAACAGCTGCGAAGGCGATAAGACGGCAGCCGAAGGTCGATGCGTCGTCGCTGATCCACT 1416678 Query 17151 TCTGCACCCACTCGGCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 | | |||| | || || |||| ||||| || | || || || || || | Sbjct 1416677 TTAGTGCCCAGTTAGCCTTCTTGCGG-ATGCAGGGGATGTTGTCGATAGCGTTGAAGAGG 1416619 Query 17210 T-TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 | | | || | | | ||| | || || || ||||||||||| ||| | ||||| Sbjct 1416618 TATGTGCGTTGGC-GAGGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGA 1416560 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 ||| ||||||||||| ||||| || ||||| ||||| || || || | |||||| || Sbjct 1416559 GTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGTATTTGCAC 1416500 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 || | |||||| || | || || ||||| || |||||||| |||||||| || Sbjct 1416499 CTCGCCACTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCTGATGCGGCGAAGAA 1416440 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGC----GCCAGTC 17442 || | | |||| |||||| || ||||| || || || |||| |||||| Sbjct 1416439 GGCAAGGACATGCGAAATGAAGAATCGCTCGTCATCGTTG--AG-ACGCTTGTTCCAGTC 1416383 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 | | || || || | ||| | || || | ||||| || ||| ||||||| || Sbjct 1416382 GTGCAGGTCCTTCGACAGATCGATCTCCTCTGCTGTCCAGAACGATGCCTCTGCCTTCTT 1416323 Query 17503 ATACATATTCCAAAT 17517 ||||| | ||| || Sbjct 1416322 GTACATTTGCCATAT 1416308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543872691560