Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq198 129 7e-25 >seq198 Length=398492 Score = 129 bits (142), Expect = 7e-25 Identities = 421/645 (65%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||| |||||||| |||| || | ||| ||||| || || | |||| | | | || Sbjct 354931 TTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCC 354872 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 || || || | ||| ||||||| | ||| || ||| ||| | ||| || ||||| || Sbjct 354871 GGGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGCACACGCTTCATGAA 354812 Query 54043 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 ||||||||| ||||| ||||| || || || || | | | ||||| || || Sbjct 354811 GAGATCAGGGATCCACAGAGCGTAGAACAAG-TCACGAGCGCGGACCTCCTCCTTGCCGT 354753 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||||| || || ||||| | || || || | |||||||| || | ||| |||| Sbjct 354752 GGTTCTTGCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGG 354693 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | || || || ||||| || ||||| || | || ||||| ||||| || | | Sbjct 354692 CGAATGCGCCGGGTCGCTTGTTGCCACCCTGGTCGACATACCTAGCAGTGTTGTTGAACA 354633 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | | | ||| || | | ||| || |||| ||||| || || | || || ||| Sbjct 354632 CCCGTAGCATGGGTACGAGACCGTTTGATGTGCCATTTGTACCCGCAATGTACGAGCCAG 354573 Query 54282 TGGCACGAAT---AT-TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 | || ||||| || | | ||| || || || || || || |||| ||||| | Sbjct 354572 TCGCCCGAATGCGATGTGC--GTTG--AGTCCGATGCCACCGGCGTTTTTCGAGATCATC 354517 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || || | ||| || || |||||||| || || || ||| |||||| | || Sbjct 354516 GCACAAGTCTTCAGCGTGTCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGATCAGG 354457 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || || || | ||| || || || || | || | || || ||||| || Sbjct 354456 AAGCATGAAGCAAGTTGTGCTTGAGGTGTGCCAGCGCTGAACAGCGTCGGCGAAGCATGT 354397 Query 54458 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 || || | || | || | |||| |||||||||||||| || | || || ||| Sbjct 354396 GTGAAATACTTGTTGGACATGTAG-TTGTACGTCTCGATCGCCGCATCAATGTCCTCGCC 354338 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 || || ||||| ||||||||||| | ||||||||| || || || Sbjct 354337 GTGTATACCTACAGCGACACGCATGATCATGTGCTGTGGCCTCTC 354293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719618454160