Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq184 96.9 3e-15 seq228 82.4 6e-11 >seq184 Length=1511567 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | |||||||| || || ||||| ||||| | Sbjct 735929 CCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 735988 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || | | ||||||||| || Sbjct 735989 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGA 736048 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 736049 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACC 736108 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166 || | ||| |||||||||||||| || |||||||| || Sbjct 736109 TCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| |||||||| || ||||||||||| | || || || ||||||| || || ||||| Sbjct 735730 AGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCC 735789 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | ||| ||||| || | || |||||||| |||||| || Sbjct 735790 GGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTT 735849 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| || || | ||| || | ||| |||||||||||||| | ||| Sbjct 735850 GACGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGCGT 735909 Query 21158 TTTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 735910 CTTGACGAAGATCTGCAT 735927 >seq228 Length=1254254 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | ||||||||||| || ||||| || || | Sbjct 556014 CCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 556073 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || | | ||||||||| || Sbjct 556074 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGG 556133 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | | ||| || || | |||| Sbjct 556134 ATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACC 556193 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166 || | ||| |||||||||||||| || || || || || Sbjct 556194 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257825942172