Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq112 334 8e-87 seq1 307 1e-78 seq228 131 2e-25 seq184 127 2e-24 seq207 102 8e-17 seq193 102 8e-17 >seq112 Length=1778705 Score = 334 bits (370), Expect = 8e-87 Identities = 566/806 (70%), Gaps = 19/806 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| | || ||| Sbjct 1416308 ATATGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACAGCAGAGGAGATCGATCTG 1416367 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| | ||||||| | ||| | ||||| ||||||| ||||| | Sbjct 1416368 TCGAAGGACCTGCACGACTGGAACAAGCGTCTCAACGATGACGAGCGATTCTTCATTTCG 1416427 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || ||||| |||||||| |||||||| ||||||||||| ||||||||||| Sbjct 1416428 CATGTCCTTGCCTTCTTCGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 1416487 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | |||||||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 1416488 TTCAGTGGCGAGGTGCAAATACCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 1416547 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGG 116930 |||||| | ||||| || | || || ||||||||||| ||| | ||| | ||| Sbjct 1416548 GAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAACCTCGC 1416607 Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | | | | || ||||| ||||| | || || ||| || ||||||| Sbjct 1416608 CAACGCACATAC--CTCTTCAACGCTATCGACAACATCCCCTGCATCCGCAAGAAGGCTA 1416665 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC--CG-CCTTCGGCGAGCGCCTGGTGG 117047 | ||||| || |||||| || | || || || |||||||| || || | | Sbjct 1416666 ACTGGGCACTAAAGTGGATCAGCGAC---GACGCATCGACCTTCGGCTGCCGTCTTATCG 1416722 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| || || ||||| ||||||| || ||| ||||| ||||| || ||||||| Sbjct 1416723 CCTTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCA 1416782 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| |||||||||||||||||||| || ||| || ||||||||||| | ||||||| Sbjct 1416783 AGAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGG 1416842 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC-G 117226 | |||| |||||||||||| ||||| | ||| | ||| | | | | | | Sbjct 1416843 GCATGCACACCGACTTTGCCTGCATGCTGCACGCACATCT-CCGCAACAAGCCATCACTC 1416901 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | |||| ||||| ||||||| || |||| |||||||| ||||| | || Sbjct 1416902 GACCTCGTCCACCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGAC 1416961 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 || ||||| |||| || || || | || || || | |||| || |||||||||| Sbjct 1416962 GCCCTGCC-CTGCGCACTTCTCGGCATGAA-CGCCAAGCTCATGTGCCAGTACATCGAGT 1417019 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404 | ||||| ||| | || || |||| || | | | |||| ||||||| | |||||| Sbjct 1417020 TTGTCGCTGACCGTCTACTCCTCGCACTCGGCCACAGCAAGTACTACAATGCCACCAACC 1417079 Query 117405 CGCTGGACTTTATGAACCTCATCTCC 117430 | | ||||| ||| | ||||||| Sbjct 1417080 CCTTCGACTTCATGGAGAACATCTCC 1417105 >seq1 Length=1805414 Score = 307 bits (340), Expect = 1e-78 Identities = 560/806 (69%), Gaps = 19/806 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 289383 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATCTG 289442 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || || | ||||||| | ||| | || || ||||||| ||||| Sbjct 289443 TCGAAAGATCTGCACGACTGGAACAAGCGTCTCAATGATGACGAGCGATTCTTCATTTCA 289502 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 289503 CATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTCGAGCGA 289562 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | |||||||| | | ||||| || |||||||||||||| |||||| ||| Sbjct 289563 TTTAGTGGCGAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 289622 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGG 116930 ||||| | ||||| || | || || || |||||||| ||| | ||| | ||| Sbjct 289623 GAGAATATCCACTCCGAGACCTACTCACTACTTATCGACACCTACATCAGCGAACCTCGC 289682 Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | | | | || ||||| ||||| | || |||||| || |||||||| Sbjct 289683 CAACGCACATAC--CTCTTTAACGCTATCGACAATATCCCGTGCATCCGCAAGAAGGCCA 289740 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC--CG-CCTTCGGCGAGCGCCTGGTGG 117047 | ||||| || |||||| || | || || || |||||||| || || | | Sbjct 289741 ACTGGGCACTAAAGTGGATCAGCGAC---GACGCATCGACCTTCGGCTGCCGTCTCATCG 289797 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| || ||||||||| | ||||| || || |||||||| || || ||||||| Sbjct 289798 CCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCA 289857 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| ||||| || ||||||||||| || ||| |||||||||||| ||| | ||||||| Sbjct 289858 AGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGG 289917 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC-G 117226 | |||| |||||| |||||| ||||| | ||| | ||| | | | | | | Sbjct 289918 GCATGCACACCGACTTCGCCTGTATGCTGCACGCACATCT-CCGCAACAAGCCATCACTC 289976 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | ||| ||||| |||| || || |||| |||||||| ||||| | || Sbjct 289977 GACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTTTCAGAC 290036 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGT 117344 || || || |||| || || || | || || || | |||| || |||||||||| Sbjct 290037 GCCCTACC-CTGCGCACTTCTCGGCATGAA-CGCCAAGCTCATGTGCCAGTACATCGAGT 290094 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACC 117404 ||||||| ||| | || || |||| || | | | |||| |||||||| | |||||| Sbjct 290095 TCGTCGCTGACCGCCTACTCCTCGCACTCGGCCACAGCAAGTACTACAACGCCACCAACC 290154 Query 117405 CGCTGGACTTTATGAACCTCATCTCC 117430 | | ||||| ||| | ||||||| Sbjct 290155 CCTTCGACTTCATGGAGAACATCTCC 290180 >seq228 Length=1254254 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 |||||||| || | || ||||| ||||||||| | || || || | |||||| | | Sbjct 556231 TTCGTAAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 556172 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||||||||||||||| | |||||||| || | Sbjct 556171 GACAATGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCGCCAGACCAGCAGCGCTTG 556112 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||| ||||||||||||||| Sbjct 556111 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAG 556052 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || ||||| || Sbjct 556051 GAGTCCACCCTCCATCTCGT 556032 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | | Sbjct 555784 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 555725 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||| ||||| | || || Sbjct 555724 GACACAATCGACAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGATCA 555666 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| |||| |||| || || | | ||||||||| Sbjct 555665 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGGACGTTGAGCGACTACAA 555606 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | |||||||| | ||| |||| ||| | || || Sbjct 555605 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTTTGCGTGGAGG 555558 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || || || Sbjct 556012 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCC 555953 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | || || ||||| || || | ||||| Sbjct 555952 GACACCATCGACAACG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCTCCAGACCA 555894 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 555893 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAA 555834 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 555833 CATCCAGAAGGAATCGACTCTCCACCTCGT 555804 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 1164940 GACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 1164999 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||||| |||||||||||||||||||||| | || || || || || || Sbjct 1165000 GACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGTCCTG 1165059 Query 40903 CGC 40905 ||| Sbjct 1165060 CGC 1165062 >seq184 Length=1511567 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| || ||| | | Sbjct 735699 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 735640 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||| ||||| | ||||| Sbjct 735639 GACACGATCGACAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCA 735581 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||| |||| |||| | || | | ||||||||| Sbjct 735580 GCAGCGTCTCATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTTTGAGCGACTACAA 735521 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | |||||||| Sbjct 735520 CATCCAGAAGGAGTCGACGCTGCA 735497 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| ||||||||| |||| || || | || Sbjct 735927 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCC 735868 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| || || | ||||| Sbjct 735867 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 735809 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| ||||| || || || |||| ||||| || |||||| || Sbjct 735808 ACAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTATAA 735749 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 735748 CATCCAGAAGGAGTCGACTCTCCACCTCGT 735719 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| ||||| | || ||||| ||||||||| | || || || | |||||| | | Sbjct 736146 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 736087 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| || | |||||||| || | Sbjct 736086 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 736027 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||| Sbjct 736026 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAA 735967 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || ||||| || Sbjct 735966 GAGTCCACCCTTCATCTCGT 735947 >seq207 Length=296016 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | Sbjct 213105 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACGATC 213046 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| ||||| | |||||||| || | Sbjct 213045 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGGTTG 212986 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| || || ||||| || || | | | || || | ||| ||||||||||||||| Sbjct 212985 ATTTTCGCCGGAAAGCAGCTTGAGGATGGGAGGACACTGAGCGATTACAACATCCAGAAG 212926 Query 40879 G 40879 | Sbjct 212925 G 212925 >seq193 Length=432561 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40780 CTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTG 40839 || ||||| ||||| ||||| | |||||||| || | |||| ||| ||||| ||||| Sbjct 90722 CTAGACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTC 90663 Query 40840 GACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||| ||||||||| |||||||||||||||||| ||| | || || || |||| Sbjct 90662 GAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCGACCCTTCACTTAGTC 90603 Query 40900 TTGCGC 40905 ||||| Sbjct 90602 CTGCGC 90597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217480455920