Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq228 125 6e-24
seq184 123 2e-23
seq207 98.7 9e-16
>seq228
Length=1254254
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
||||| || || | || ||||||||| | || ||||| || ||||||||||| ||||||
Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || ||||| | ||| || |||||| |||| |||||||||||||| || ||
Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690
|| |||||||| || ||| || || || | |||| ||||| | || | || ||
Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGAT-TCCAC 555736
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || ||||| || ||||| || || || || |||||
Sbjct 555737 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
Score = 116 bits (128), Expect = 3e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || ||||| || || |||||||||||| | ||||| ||||||||||||
Sbjct 556038 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGC 556097
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| | |||||||| || || || |||||||| |||||| || ||
Sbjct 556098 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATCTTG 556157
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | |||| |||||| | |||||| ||||| | ||| | || |||||||||
Sbjct 556158 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 556217
Query 118716 AGAGTTTTTACAAA 118729
| || ||||| ||
Sbjct 556218 AAGGTCTTTACGAA 556231
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || || || || || |||||||| ||| | ||| || |||||||||||
Sbjct 555809 GTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTG 555868
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || ||| ||||||| |||||||| || ||||| || |||||||| || || ||
Sbjct 555869 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATCTT 555928
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | | ||| ||||||| ||| | || ||||| ||
Sbjct 555929 CGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 555988
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||||||
Sbjct 555989 GAGGGTCTTGACGAAGATCTGCAT 556012
>seq184
Length=1511567
Score = 123 bits (136), Expect = 2e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| |||||||| || |||||||| ||| | ||||| |||||||||||| || ||
Sbjct 735959 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 736018
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||| || ||||| ||||||||||||||| || || ||
Sbjct 736019 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 736078
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||| | |||||| ||||| | ||| | || |||||||||| |||
Sbjct 736079 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 736138
Query 118722 TTTACAAA 118729
|| || ||
Sbjct 736139 TTGACGAA 736146
Score = 113 bits (124), Expect = 4e-20
Identities = 153/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||| ||||||| ||| | |||||
Sbjct 735490 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTCCTGCCGTCCTC 735549
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| || || ||| |||||||||||||||| || || || || |||||||| ||
Sbjct 735550 CAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTG 735609
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707
||| || || || | |||| ||||| | || | || ||||||| || | || |
Sbjct 735610 AATCTTCGACTTCACGTTGTCGATCGTGTCTGATGAT-TCCACCTCGAGCGTGATGGTCT 735668
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| || ||||| || || ||||| |||||
Sbjct 735669 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || ||||| || ||| | |||||| |||||||| ||
Sbjct 735724 GTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTG 735783
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||
Sbjct 735784 CTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTT 735843
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | ||| ||||||| ||| | || ||||||||
Sbjct 735844 CGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 735903
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || ||||||||
Sbjct 735904 GAGCGTCTTGACGAAGATCTGCAT 735927
>seq207
Length=296016
Score = 98.7 bits (108), Expect = 9e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||||||||||| || | | |||||| ||||| ||||| ||| | ||
Sbjct 212927 TTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAATC 212986
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| || || || || ||||||||||| || || || || | |||
Sbjct 212987 AACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 213046
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||||||| | ||||||||||| ||| | || ||||| || || || || || ||
Sbjct 213047 ATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 213105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433828988288764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |