Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq228 134 2e-26 seq184 118 1e-21 seq204 98.7 1e-15 seq207 95.1 1e-14 >seq228 Length=1254254 Score = 134 bits (148), Expect = 2e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| || ||||| | ||||||| |||||| |||| || |||||| ||||| |||| Sbjct 555550 CCTACTGCCCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGT 555609 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || || ||||| |||| || | ||||||||||||||| || || |||||||| | Sbjct 555610 AGTCGCTCAACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGAT 555669 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | || | | |||||| ||| ||| | || | | ||| | | | ||||| Sbjct 555670 CTGGTGGGATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATTGTGTCTGAT 555728 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| |||| ||||||||| ||||| || || ||||| || ||||||||||| Sbjct 555729 GATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 555822 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAG 555881 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | |||||| ||| ||| || || | ||| Sbjct 555882 ATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCA-CGTT 555940 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 555941 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 556000 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 556001 GAAGATCTGCAT 556012 >seq184 Length=1511567 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || || ||||| | | ||| | |||||| |||| || |||||| || || ||||| Sbjct 735467 TACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 735526 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || ||||| |||| || | |||||| || ||||| ||||| ||||||||||| Sbjct 735527 TCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCT 735586 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 | || | | |||||| ||| ||| | || | | ||| | | | |||||| || Sbjct 735587 GGTGGGATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGA 735645 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| |||| ||||||||| ||||| || || ||||| || || |||||||| Sbjct 735646 TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699 >seq204 Length=319970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||||||| ||| |||| | || || |||||||| || ||||| | Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||| | ||| | | |||||||||| ||| || |||| | Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||||| ||| ||||| || | ||||| || |||||||| || ||||| || | Sbjct 81926 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 81867 Query 43174 AG 43175 || Sbjct 81866 AG 81865 >seq207 Length=296016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || |||||||| ||| |||| | | || || |||||||| || ||||| | Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||| | ||| | | |||||||||| ||| || |||| | Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104 Query 43174 AG 43175 || Sbjct 213105 AG 213106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815691558760