Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq198 141 1e-28 >seq198 Length=398492 Score = 141 bits (156), Expect = 1e-28 Identities = 424/645 (66%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 ||| |||||||| | || || | ||||||||| || || | |||| | | | | Sbjct 354931 TTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCC 354872 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 || || || | ||| ||||||| | ||| || ||| ||| | ||| || ||||| || Sbjct 354871 GGGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGCACACGCTTCATGAA 354812 Query 63281 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||||| ||||| ||||| || || || || | | | ||||| || || Sbjct 354811 GAGATCAGGGATCCACAGAGCGTAGAACAAG-TCACGAGCGCGGACCTCCTCCTTGCCGT 354753 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||||| || || ||||| | || || || | |||||||| || | ||| |||| Sbjct 354752 GGTTCTTGCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGG 354693 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || || || ||||| || ||||| || | || ||||| ||||| || | | Sbjct 354692 CGAATGCGCCGGGTCGCTTGTTGCCACCCTGGTCGACATACCTAGCAGTGTTGTTGAACA 354633 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | | ||| || | | |||||||||| | ||||| ||||| | || || ||| Sbjct 354632 CCCGTAGCATGGGTACGAGACCGTTTGATGTGCCATTTGTACCCGCAATGTACGAGCCAG 354573 Query 63520 TGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 | || ||||| || | | ||| || || || || || || |||| ||||| | Sbjct 354572 TCGCCCGAATGCGATGTGC--GTTG--AGTCCGATGCCACCGGCGTTTTTCGAGATCATC 354517 Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 || || || | |||||| || ||||| || ||||| || || |||||| | || Sbjct 354516 GCACAAGTCTTCAGCGTGTCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGATCAGG 354457 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || || || | ||| ||| || || || | || | || || ||||| || Sbjct 354456 AAGCATGAAGCAAGTTGTGCTTGAGGTGTGCCAGCGCTGAACAGCGTCGGCGAAGCATGT 354397 Query 63696 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || || | || | || | |||| ||||||||||| || || | || || ||| Sbjct 354396 GTGAAATACTTGTTGGACATGTAG-TTGTACGTCTCGATCGCCGCATCAATGTCCTCGCC 354338 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 || || ||||| ||||||||||| | ||||||||| || || || Sbjct 354337 GTGTATACCTACAGCGACACGCATGATCATGTGCTGTGGCCTCTC 354293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815497983760