Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq112 116 4e-21 seq176 107 2e-18 seq1 104 2e-17 seq184 98.7 1e-15 seq228 96.9 3e-15 >seq112 Length=1778705 Score = 116 bits (128), Expect = 4e-21 Identities = 355/545 (65%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 |||||||| | ||||| | || || | ||||| |||| | | |||||| | || |||| Sbjct 1416624 TCAACGCTATCGACAACATCCCCTGCATCCGCAAGAAGGCTAACTGGGCACTAAAGTGGA 1416683 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || ||||| | | || || | | ||||| |||| || || || || ||| Sbjct 1416684 TCAGCGACGACGCATCGACCTTCGGCTGCCGTCTTATCGCCTTCGCAGCTGTTGAGGGTA 1416743 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || || || || || || || || || | |||| | ||| | ||||||| Sbjct 1416744 TCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCG 1416803 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771 |||||||||| || ||| | || ||||| ||||| || |||||||| || ||||| | Sbjct 1416804 GCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACCGACTTTGCCT 1416863 Query 52772 GTTTGTATTATAATACGCGCGTTAAAGAAAAATTG--TCATATGAAAAAATTCTAGACAT 52829 | || | ||| | | | || | ||| || | | | || Sbjct 1416864 GCATGCTGCA-----CGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCCACCAGAT 1416918 Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889 | | ||||||||||| || || ||||||| | ||||||| | ||| || | Sbjct 1416919 CATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTGCGCACT 1416978 Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949 | ||||||||||| | | |||||| |||||||||||||||| || ||| | || | Sbjct 1416979 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTACT 1417038 Query 52950 GAT-GCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008 | ||| ||||| || || ||||| ||||| |||||||| || ||| | | Sbjct 1417039 CCTCGCA-CTCGGCCACAGCAAGTACTACAATGCCACCAACCCCTTCGACTTCATGGAGA 1417097 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAATGT 53068 |||| || |||| ||||| |||||||| ||||||| || || || || ||| ||| | Sbjct 1417098 ACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGACTACCAAAAGG 1417157 Query 53069 TTGGT 53073 |||| Sbjct 1417158 CTGGT 1417162 >seq176 Length=738521 Score = 107 bits (118), Expect = 2e-18 Identities = 411/635 (65%), Gaps = 13/635 (2%) Strand=Plus/Minus Query 153878 TTCAAACTCATCACC--AAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGT 153935 |||||| || || || |||||| | ||| ||||||| ||||| || ||||||| | Sbjct 358890 TTCAAATTCGTCTCCGTAAACGTC--GGCAAGACCGGGACACTCGTTCGGGCACATCAAT 358833 Query 153936 GACCA-TCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTT 153994 | ||| || || || ||||| || || ||| || | |||||||| ||| || |||| Sbjct 358832 GTCCAATCAGCG-TTGTCTTGCACACGTTTCATGAAGAGATCGGGAATCCACAGTGCGTA 358774 Query 153995 CATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTC 154054 | |||||| || || || || |||| ||| ||| | || | || Sbjct 358773 GAACAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACGA 358714 Query 154055 CATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTG---CC 154111 || ||||| ||||| || || | ||| | || ||||| ||||||| || Sbjct 358713 CAAGATGTCTGCGTGCCATGGCTCAAGGTAGATGGCAAACGCGCCGGGACGCTTGTTGCC 358654 Query 154112 GCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCT 154171 |||||| | || | | || | |||||||| ||||| |||||||||| |||||| | Sbjct 358653 GCCCTGGTCGACATATCTAGCCGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTT 358594 Query 154172 GGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCGGCCTCGAACGCTGTTTACGTTTA 154230 | || ||||||||| ||| | | | | ||| |||| || | | |||| | Sbjct 358593 CGATGTGCCGTTTGTACCCGCAATGTACGATCCAGTCGCC-CGAATGCGATGTGCGTTGA 358535 Query 154231 ATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATAC 154290 ||| || || ||| ||| ||| |||||||| || ||| |||| ||||| ||||||| Sbjct 358534 GTCCGATGCCACCGGCGTTTTTCGAGATCATCGCACAAGTCTTCAGTGTGTCGTAGATAC 358475 Query 154291 CACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAACATGAACTCATCTGCGGAGTTGGA 154349 | ||| |||||| | ||| ||| || | ||| ||||| | ||| | ||| Sbjct 358474 CCTCAATACTATCGTCCTTCAT-GTCGATCAAGAAGCATGAGGCAAGCTGTGCTTGTGGT 358416 Query 154350 GTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACATCTTTGTGCTCAAAAATTTA 154409 ||||| || |||| || || || || ||| | ||| || || | || Sbjct 358415 GTGCCAGCGCTGAACAGCGTTGGCGAAGCATGTGTGAAGTACTTGTTGGACATGTAGTTG 358356 Query 154410 TAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATACGCATGTGC 154469 || | || || || ||| ||||| || ||| ||||| | || | ||||||| | Sbjct 358355 TACGTCTCAATCGCCGCATCGATGTCTTCGCCATGTATACCCACTGCCACACGCATGATC 358296 Query 154470 ATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAAT 154504 ||||| || ||| || || || ||| ||| ||| Sbjct 358295 ATGTGCTGTGGCCTCTCCGCGACCTTTCCGTCAAT 358261 >seq1 Length=1805414 Score = 104 bits (114), Expect = 2e-17 Identities = 347/533 (65%), Gaps = 13/533 (2%) Strand=Plus/Plus Query 52534 AACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC 52593 |||||| | |||||| | ||||| | ||||| |||| | |||||| | || |||||| Sbjct 289701 AACGCTATCGACAATATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATC 289760 Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653 ||||| | | || || | | ||||| |||| || || || || || | Sbjct 289761 AGCGACGACGCATCGACCTTCGGCTGCCGTCTCATCGCCTTCGCAGCTGTCGAGGGCATT 289820 Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGG 52712 || || || ||| || || || || || | |||| || | |||| | |||||||| Sbjct 289821 TTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGC-TGATGCCCGG 289879 Query 52713 CCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 |||||| || ||||||| | || || || ||||| || |||||||| || || || || Sbjct 289880 CCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTG 289939 Query 52773 TTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC---AT 52829 | || | ||| | | | || | | ||| | || | || || Sbjct 289940 TATGCTGCA-----CGCACATCTCCGCAACAA-GCCATCACTCGACCTTGTCCACCAGAT 289993 Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889 | | || || ||||| || || ||||||| || | ||||| ||||| || | Sbjct 289994 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACT 290053 Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949 | ||||||||||| | | |||||| ||||||||||||| || || ||| | || | Sbjct 290054 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 290113 Query 52950 GAT-GCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008 | ||| ||||| || || ||||| || || |||||||| || ||| | | Sbjct 290114 CCTCGCA-CTCGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 290172 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| || |||| ||||| || ||||| ||||||| || || || || ||| Sbjct 290173 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 290225 >seq184 Length=1511567 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || |||||||| || ||||| || ||| | |||| || |||||||| Sbjct 735953 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 736012 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 736013 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 736072 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||||||||||| ||| | |||||||||||| Sbjct 736073 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 736132 Query 139742 AACGTTTTTACGAA 139755 || ||||| ||||| Sbjct 736133 AAGGTTTTGACGAA 736146 >seq228 Length=1254254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| |||||| | |||| || |||||||| || || Sbjct 556044 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 556103 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| || ||||| || || || ||||| |||||||| ||| || || Sbjct 556104 GCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTG 556163 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||||| ||| | |||||||||||||| || Sbjct 556164 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 556223 Query 139748 TTTACGAA 139755 |||||||| Sbjct 556224 TTTACGAA 556231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062344386400