Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq112 116 4e-21
seq176 107 2e-18
seq1 104 2e-17
seq184 98.7 1e-15
seq228 96.9 3e-15
>seq112
Length=1778705
Score = 116 bits (128), Expect = 4e-21
Identities = 355/545 (65%), Gaps = 9/545 (2%)
Strand=Plus/Plus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
|||||||| | ||||| | || || | ||||| |||| | | |||||| | || ||||
Sbjct 1416624 TCAACGCTATCGACAACATCCCCTGCATCCGCAAGAAGGCTAACTGGGCACTAAAGTGGA 1416683
Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651
|| ||||| | | || || | | ||||| |||| || || || || |||
Sbjct 1416684 TCAGCGACGACGCATCGACCTTCGGCTGCCGTCTTATCGCCTTCGCAGCTGTTGAGGGTA 1416743
Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711
| || || || || || || || || || | |||| | ||| | |||||||
Sbjct 1416744 TCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCG 1416803
Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771
|||||||||| || ||| | || ||||| ||||| || |||||||| || ||||| |
Sbjct 1416804 GCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACCGACTTTGCCT 1416863
Query 52772 GTTTGTATTATAATACGCGCGTTAAAGAAAAATTG--TCATATGAAAAAATTCTAGACAT 52829
| || | ||| | | | || | ||| || | | | ||
Sbjct 1416864 GCATGCTGCA-----CGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCCACCAGAT 1416918
Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889
| | ||||||||||| || || ||||||| | ||||||| | ||| || |
Sbjct 1416919 CATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTGCGCACT 1416978
Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949
| ||||||||||| | | |||||| |||||||||||||||| || ||| | || |
Sbjct 1416979 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTACT 1417038
Query 52950 GAT-GCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008
| ||| ||||| || || ||||| ||||| |||||||| || ||| | |
Sbjct 1417039 CCTCGCA-CTCGGCCACAGCAAGTACTACAATGCCACCAACCCCTTCGACTTCATGGAGA 1417097
Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAATGT 53068
|||| || |||| ||||| |||||||| ||||||| || || || || ||| ||| |
Sbjct 1417098 ACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGACTACCAAAAGG 1417157
Query 53069 TTGGT 53073
||||
Sbjct 1417158 CTGGT 1417162
>seq176
Length=738521
Score = 107 bits (118), Expect = 2e-18
Identities = 411/635 (65%), Gaps = 13/635 (2%)
Strand=Plus/Minus
Query 153878 TTCAAACTCATCACC--AAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGT 153935
|||||| || || || |||||| | ||| ||||||| ||||| || ||||||| |
Sbjct 358890 TTCAAATTCGTCTCCGTAAACGTC--GGCAAGACCGGGACACTCGTTCGGGCACATCAAT 358833
Query 153936 GACCA-TCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTT 153994
| ||| || || || ||||| || || ||| || | |||||||| ||| || ||||
Sbjct 358832 GTCCAATCAGCG-TTGTCTTGCACACGTTTCATGAAGAGATCGGGAATCCACAGTGCGTA 358774
Query 153995 CATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTC 154054
| |||||| || || || || |||| ||| ||| | || | ||
Sbjct 358773 GAACAGGTCACGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACGA 358714
Query 154055 CATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTG---CC 154111
|| ||||| ||||| || || | ||| | || ||||| ||||||| ||
Sbjct 358713 CAAGATGTCTGCGTGCCATGGCTCAAGGTAGATGGCAAACGCGCCGGGACGCTTGTTGCC 358654
Query 154112 GCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCT 154171
|||||| | || | | || | |||||||| ||||| |||||||||| |||||| |
Sbjct 358653 GCCCTGGTCGACATATCTAGCCGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTT 358594
Query 154172 GGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCGGCCTCGAACGCTGTTTACGTTTA 154230
| || ||||||||| ||| | | | | ||| |||| || | | |||| |
Sbjct 358593 CGATGTGCCGTTTGTACCCGCAATGTACGATCCAGTCGCC-CGAATGCGATGTGCGTTGA 358535
Query 154231 ATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATAC 154290
||| || || ||| ||| ||| |||||||| || ||| |||| ||||| |||||||
Sbjct 358534 GTCCGATGCCACCGGCGTTTTTCGAGATCATCGCACAAGTCTTCAGTGTGTCGTAGATAC 358475
Query 154291 CACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAACATGAACTCATCTGCGGAGTTGGA 154349
| ||| |||||| | ||| ||| || | ||| ||||| | ||| | |||
Sbjct 358474 CCTCAATACTATCGTCCTTCAT-GTCGATCAAGAAGCATGAGGCAAGCTGTGCTTGTGGT 358416
Query 154350 GTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACATCTTTGTGCTCAAAAATTTA 154409
||||| || |||| || || || || ||| | ||| || || | ||
Sbjct 358415 GTGCCAGCGCTGAACAGCGTTGGCGAAGCATGTGTGAAGTACTTGTTGGACATGTAGTTG 358356
Query 154410 TAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATACGCATGTGC 154469
|| | || || || ||| ||||| || ||| ||||| | || | ||||||| |
Sbjct 358355 TACGTCTCAATCGCCGCATCGATGTCTTCGCCATGTATACCCACTGCCACACGCATGATC 358296
Query 154470 ATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAAT 154504
||||| || ||| || || || ||| ||| |||
Sbjct 358295 ATGTGCTGTGGCCTCTCCGCGACCTTTCCGTCAAT 358261
>seq1
Length=1805414
Score = 104 bits (114), Expect = 2e-17
Identities = 347/533 (65%), Gaps = 13/533 (2%)
Strand=Plus/Plus
Query 52534 AACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC 52593
|||||| | |||||| | ||||| | ||||| |||| | |||||| | || ||||||
Sbjct 289701 AACGCTATCGACAATATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATC 289760
Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653
||||| | | || || | | ||||| |||| || || || || || |
Sbjct 289761 AGCGACGACGCATCGACCTTCGGCTGCCGTCTCATCGCCTTCGCAGCTGTCGAGGGCATT 289820
Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGG 52712
|| || || ||| || || || || || | |||| || | |||| | ||||||||
Sbjct 289821 TTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGC-TGATGCCCGG 289879
Query 52713 CCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772
|||||| || ||||||| | || || || ||||| || |||||||| || || || ||
Sbjct 289880 CCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTG 289939
Query 52773 TTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC---AT 52829
| || | ||| | | | || | | ||| | || | || ||
Sbjct 289940 TATGCTGCA-----CGCACATCTCCGCAACAA-GCCATCACTCGACCTTGTCCACCAGAT 289993
Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889
| | || || ||||| || || ||||||| || | ||||| ||||| || |
Sbjct 289994 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACT 290053
Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949
| ||||||||||| | | |||||| ||||||||||||| || || ||| | || |
Sbjct 290054 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 290113
Query 52950 GAT-GCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008
| ||| ||||| || || ||||| || || |||||||| || ||| | |
Sbjct 290114 CCTCGCA-CTCGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 290172
Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
|||| || |||| ||||| || ||||| ||||||| || || || || |||
Sbjct 290173 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 290225
>seq184
Length=1511567
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || |||||||| || ||||| || ||| | |||| || ||||||||
Sbjct 735953 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 736012
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || |||||| || ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 736013 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 736072
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||||| | ||||||||||| ||| | ||||||||||||
Sbjct 736073 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 736132
Query 139742 AACGTTTTTACGAA 139755
|| ||||| |||||
Sbjct 736133 AAGGTTTTGACGAA 736146
>seq228
Length=1254254
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| |||||| | |||| || |||||||| || ||
Sbjct 556044 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 556103
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| || ||||| || || || ||||| |||||||| ||| || ||
Sbjct 556104 GCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTG 556163
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| | ||||||||||| ||| | |||||||||||||| ||
Sbjct 556164 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 556223
Query 139748 TTTACGAA 139755
||||||||
Sbjct 556224 TTTACGAA 556231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496062344386400
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