Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq198 141 1e-28
seq176 120 4e-22
>seq198
Length=398492
Score = 141 bits (156), Expect = 1e-28
Identities = 424/645 (66%), Gaps = 12/645 (2%)
Strand=Plus/Minus
Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975
||| |||||||| |||| || | ||||||||| || || | ||| | | | ||
Sbjct 354931 TTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCC 354872
Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035
|| || || ||||| ||||||| || ||| || | | ||| | || || ||||| ||
Sbjct 354871 GGGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGCACACGCTTCATGAA 354812
Query 72036 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094
||||||||| ||||| ||||| || || || || | | | |||||| || ||
Sbjct 354811 GAGATCAGGGATCCACAGAGCGTAGAACAAG-TCACGAGCGCGGACCTCCTCCTTGCCGT 354753
Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154
||||| || || ||||| | || || || | |||||||| || | ||| ||||
Sbjct 354752 GGTTCTTGCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGG 354693
Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214
| | | || || || ||||| || ||||| || | || ||||| ||||| || | |
Sbjct 354692 CGAATGCGCCGGGTCGCTTGTTGCCACCCTGGTCGACATACCTAGCAGTGTTGTTGAACA 354633
Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274
| | | ||| || | | ||| || |||| ||||| || || | || || |||
Sbjct 354632 CCCGTAGCATGGGTACGAGACCGTTTGATGTGCCATTTGTACCCGCAATGTACGAGCCAG 354573
Query 72275 TGGCACGAAT---AT-TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330
| || ||||| || ||| ||| || || || || || || |||| ||||| |
Sbjct 354572 TCGCCCGAATGCGATGTGC--GTTG--AGTCCGATGCCACCGGCGTTTTTCGAGATCATC 354517
Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390
|| || || | ||| || || |||||||| || || || ||| |||||| | ||
Sbjct 354516 GCACAAGTCTTCAGCGTGTCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGATCAGG 354457
Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| || || | ||| || || || || | || | || || ||||| ||
Sbjct 354456 AAGCATGAAGCAAGTTGTGCTTGAGGTGTGCCAGCGCTGAACAGCGTCGGCGAAGCATGT 354397
Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509
|| || | || | |||| |||| ||||||||||| || || | || || |||
Sbjct 354396 GTGAAATACTTGTTGGACATGTAG-TTGTACGTCTCGATCGCCGCATCAATGTCCTCGCC 354338
Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
||||| ||||| ||||||||||| | ||| ||||| || || ||
Sbjct 354337 GTGTATACCTACAGCGACACGCATGATCATGTGCTGTGGCCTCTC 354293
>seq176
Length=738521
Score = 120 bits (132), Expect = 4e-22
Identities = 272/403 (67%), Gaps = 7/403 (2%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| ||||| ||||| | || || || | ||||| || ||||||||||| || || ||
Sbjct 360038 GTGAACTGGATGGGCGCCGAGGCAGCCATGGTACGGAGGTAGTACATGCCAGTCTTCAGT 359979
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919
||||||| ||| ||| || ||||| ||| | ||| |||| | || || ||
Sbjct 359978 CCGAGACGCCAGCCGGTGAAGTGCATCGACGTGATCTTGCCCATAG-TTGGCTCCTTCAT 359920
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
||| || || | ||||| |||||||||||||| || | ||||| | ||| | ||
Sbjct 359919 GTGGATGTTGAGTGACTGGGACTGATCGATGAAGGCGCCACGATCTGCTGACATCTGGAT 359860
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 71038
||| | || || ||||| | ||| || || | ||| ||| || || || ||||
Sbjct 359859 GATGTTGCGCTGGCTGATCTCCCAGACAGTCTTGTACAGCTC-CTTGATTTCATCGGGAA 359801
Query 71039 GGTTTGTATT---CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095
||| | | | |||||| || |||||||||||||| || | || || || | |||
Sbjct 359800 TGTTGGGAATGCGCTGAATTGAACCACCATCTGCAATGATGCGGTTCTTCATGTTGTCAC 359741
Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155
|||| | | ||| | | |||| || |||||| || ||||| || ||||
Sbjct 359740 TCCAAAGACCCATGTCGACGAGGTCCTTAAGCAGCCAAGGATTGACGACTTGGAACTCTC 359681
Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198
| | ||| || | ||||| ||| ||||| ||||| ||||| ||
Sbjct 359680 CGGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGCTC 359638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671136960072920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |