Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq198 141 1e-28 seq176 120 4e-22 >seq198 Length=398492 Score = 141 bits (156), Expect = 1e-28 Identities = 424/645 (66%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975 ||| |||||||| |||| || | ||||||||| || || | ||| | | | || Sbjct 354931 TTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCC 354872 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 || || || ||||| ||||||| || ||| || | | ||| | || || ||||| || Sbjct 354871 GGGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGCACACGCTTCATGAA 354812 Query 72036 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 ||||||||| ||||| ||||| || || || || | | | |||||| || || Sbjct 354811 GAGATCAGGGATCCACAGAGCGTAGAACAAG-TCACGAGCGCGGACCTCCTCCTTGCCGT 354753 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 ||||| || || ||||| | || || || | |||||||| || | ||| |||| Sbjct 354752 GGTTCTTGCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGG 354693 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | | || || || ||||| || ||||| || | || ||||| ||||| || | | Sbjct 354692 CGAATGCGCCGGGTCGCTTGTTGCCACCCTGGTCGACATACCTAGCAGTGTTGTTGAACA 354633 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 | | | ||| || | | ||| || |||| ||||| || || | || || ||| Sbjct 354632 CCCGTAGCATGGGTACGAGACCGTTTGATGTGCCATTTGTACCCGCAATGTACGAGCCAG 354573 Query 72275 TGGCACGAAT---AT-TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | || ||||| || ||| ||| || || || || || || |||| ||||| | Sbjct 354572 TCGCCCGAATGCGATGTGC--GTTG--AGTCCGATGCCACCGGCGTTTTTCGAGATCATC 354517 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || || || | ||| || || |||||||| || || || ||| |||||| | || Sbjct 354516 GCACAAGTCTTCAGCGTGTCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGATCAGG 354457 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || || | ||| || || || || | || | || || ||||| || Sbjct 354456 AAGCATGAAGCAAGTTGTGCTTGAGGTGTGCCAGCGCTGAACAGCGTCGGCGAAGCATGT 354397 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || || | || | |||| |||| ||||||||||| || || | || || ||| Sbjct 354396 GTGAAATACTTGTTGGACATGTAG-TTGTACGTCTCGATCGCCGCATCAATGTCCTCGCC 354338 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 ||||| ||||| ||||||||||| | ||| ||||| || || || Sbjct 354337 GTGTATACCTACAGCGACACGCATGATCATGTGCTGTGGCCTCTC 354293 >seq176 Length=738521 Score = 120 bits (132), Expect = 4e-22 Identities = 272/403 (67%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| ||||| | || || || | ||||| || ||||||||||| || || || Sbjct 360038 GTGAACTGGATGGGCGCCGAGGCAGCCATGGTACGGAGGTAGTACATGCCAGTCTTCAGT 359979 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919 ||||||| ||| ||| || ||||| ||| | ||| |||| | || || || Sbjct 359978 CCGAGACGCCAGCCGGTGAAGTGCATCGACGTGATCTTGCCCATAG-TTGGCTCCTTCAT 359920 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || || | ||||| |||||||||||||| || | ||||| | ||| | || Sbjct 359919 GTGGATGTTGAGTGACTGGGACTGATCGATGAAGGCGCCACGATCTGCTGACATCTGGAT 359860 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 71038 ||| | || || ||||| | ||| || || | ||| ||| || || || |||| Sbjct 359859 GATGTTGCGCTGGCTGATCTCCCAGACAGTCTTGTACAGCTC-CTTGATTTCATCGGGAA 359801 Query 71039 GGTTTGTATT---CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCAT 71095 ||| | | | |||||| || |||||||||||||| || | || || || | ||| Sbjct 359800 TGTTGGGAATGCGCTGAATTGAACCACCATCTGCAATGATGCGGTTCTTCATGTTGTCAC 359741 Query 71096 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTC 71155 |||| | | ||| | | |||| || |||||| || ||||| || |||| Sbjct 359740 TCCAAAGACCCATGTCGACGAGGTCCTTAAGCAGCCAAGGATTGACGACTTGGAACTCTC 359681 Query 71156 CAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 | | ||| || | ||||| ||| ||||| ||||| ||||| || Sbjct 359680 CGGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGCTC 359638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136960072920