Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq112 107 2e-18 >seq112 Length=1778705 Score = 107 bits (118), Expect = 2e-18 Identities = 288/435 (66%), Gaps = 9/435 (2%) Strand=Plus/Plus Query 50437 GTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGC 50496 ||||| ||| | || || ||||| ||| || ||||| || | | || | ||| Sbjct 1416734 GTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGC 1416793 Query 50497 ATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACA 50556 | ||||||||||||||||| || ||| | || ||||| ||||| || |||||||| Sbjct 1416794 CTCATGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACC 1416853 Query 50557 GACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATT--ATCATACGAAACAA 50614 |||||||| || || || || ||| | | | || | |||| ||| Sbjct 1416854 GACTTTGCCTGCATG--CTGCA---CGCACATCTCCGCAACAAGCCATCACTCGACCTCG 1416908 Query 50615 TTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTAC 50674 | | || ||| || |||||||| ||||| ||||||| | ||||||| | | Sbjct 1416909 TCCACCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGC 1416968 Query 50675 CCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAG 50734 || ||| | | ||||||||||| | | |||||| ||||||| |||||||| || | Sbjct 1416969 CCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTG 1417028 Query 50735 ACAG-ATTGTTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCG 50793 || | | | | ||| || || || || ||||| ||||| |||||||| Sbjct 1417029 ACCGTCTACTCCTCGCA-CTCGGCCACAGCAAGTACTACAATGCCACCAACCCCTTCGAC 1417087 Query 50794 TTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAA 50853 || ||| | ||||| || | | ||||| |||||||| ||||| | || ||||| || Sbjct 1417088 TTCATGGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGAC 1417147 Query 50854 TACAAAATGTTTGGT 50868 ||| ||| | |||| Sbjct 1417148 TACCAAAAGGCTGGT 1417162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012707839440