Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq112 297 3e-75 seq1 257 2e-63 seq176 145 1e-29 seq198 131 2e-25 >seq112 Length=1778705 Score = 297 bits (328), Expect = 3e-75 Identities = 582/846 (69%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| || || ||||| | || ||| |||||||| Sbjct 1416308 ATATGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACAGCAGAGGAGATCGATCTG 1416367 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||||||| |||| ||| | | ||| | | || |||||| || || ||| Sbjct 1416368 TCGAAGGACCTGCACGACTGGAACAAGCGTCTCAACGATGACGAGCGATTCTTCATTTCG 1416427 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || | | |||||||| |||| || || || || |||||||| || ||| | ||| Sbjct 1416428 CATGTCCTTGCCTTCTTCGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTCGAGCGA 1416487 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 ||| | ||| || || || |||| ||| ||||| ||||| ||||| |||||||| Sbjct 1416488 TTCAGTGGCGAGGTGCAAATACCCGAGGC-TCGCTGCTTCTACGGCTTCCAGATCATGAT 1416546 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC- 125316 |||||| | ||||| || | ||||| ||| || |||| ||||| |||| || | Sbjct 1416547 GGAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAACCTCG 1416606 Query 125317 --AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 |||| | | || ||||| ||||| ||||||| | || | || || || ||||| Sbjct 1416607 CCAACGCACATAC---CTCTTCAACGCTATCGACAACATCCCCTGCATCCGCAAGAAGGC 1416663 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | | |||| | ||||||| |||||| || | | || | | | || | || Sbjct 1416664 TAACTGGGCACTAAAGTGGATCAGCGACGACGCATCGACCTTCGGCTGCCGTCTTATCGC 1416723 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| || || ||||| |||||||| || || || || |||||||| |||||||| Sbjct 1416724 CTTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAA 1416783 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| ||||||||||| || ||| | ||| ||| | || || || |||||||| Sbjct 1416784 GAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGG 1416843 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 | | ||| ||||||||| | ||| |||| |||| || | | || | | Sbjct 1416844 CATGCACACCGACTTTGCCTGCATGCTG-CACGCA--CATCTCCG---CAA---CA-AGC 1416893 Query 125615 CAGCGAT-GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 || | | || ||| | | || | ||||| ||||| ||| || |||||||| | Sbjct 1416894 CATCACTCGACCTCGTCCACCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCC 1416953 Query 125674 TAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 || | || |||| || | ||| | | ||||||||| |||||| |||||| ||||| Sbjct 1416954 TATCGGACGCCCTGCC-CTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTAC 1417012 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC---GCAAGATTTACAAC 125789 || |||||||| || || |||||||| || | |||| ||||| ||||| Sbjct 1417013 ATCGAGTTTGTCGCTGACCGTCTACTCCTCG---CACTCGGCCACAGCAAGTACTACAAT 1417069 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 |||| || ||||| || |||||| | ||| || || | || ||||| ||||| ||| Sbjct 1417070 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTC 1417129 Query 125850 GAGAAG 125855 |||||| Sbjct 1417130 GAGAAG 1417135 >seq1 Length=1805414 Score = 257 bits (284), Expect = 2e-63 Identities = 573/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| | |||||| Sbjct 289383 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATCTG 289442 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || ||| |||| ||| | | ||| | | ||| |||||| || || || Sbjct 289443 TCGAAAGATCTGCACGACTGGAACAAGCGTCTCAATGATGACGAGCGATTCTTCATTTCA 289502 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || | | |||||||| |||| || || || ||||||||||| || ||| | ||| Sbjct 289503 CATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTCGAGCGA 289562 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 || | ||| || || || |||| ||| ||||| ||||| ||||| |||||||| Sbjct 289563 TTTAGTGGCGAGGTGCAAATCCCTGAGGC-TCGCTGCTTCTACGGCTTCCAGATCATGAT 289621 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC- 125316 ||||| | ||||| || | ||||| ||| || |||| ||||| |||| || | Sbjct 289622 GGAGAATATCCACTCCGAGACCTACTCACTACTTATCGACACCTACATCAGCGAACCTCG 289681 Query 125317 --AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 |||| | | || ||||||||||| ||||||| | |||| || || || ||||| Sbjct 289682 CCAACGCACATAC---CTCTTTAACGCTATCGACAATATCCCGTGCATCCGCAAGAAGGC 289738 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | ||||||| |||||| || | | || | | | || | || Sbjct 289739 CAACTGGGCACTAAAGTGGATCAGCGACGACGCATCGACCTTCGGCTGCCGTCTCATCGC 289798 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| || || |||||||| ||||| || ||| || || || ||||| |||||||| Sbjct 289799 CTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAA 289858 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| || |||||||| || || | |||||| | || || || |||||||| Sbjct 289859 GAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGG 289918 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 | | ||| ||||| ||| | | ||| |||| |||| || | | || | | Sbjct 289919 CATGCACACCGACTTCGCCTGTATGCTG-CACGCA--CATCTCCG---CAA---CA-AGC 289968 Query 125615 CAGCGAT-GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 || | | || ||| | | || | || || || || ||| || |||||||| | Sbjct 289969 CATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCC 290028 Query 125674 TAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | | || ||||||| | ||| | | ||||||||| |||||| |||||| ||||| Sbjct 290029 TTTCAGACGCCCTACC-CTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTAC 290087 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC---GCAAGATTTACAAC 125789 || ||||| || || || || ||||| || | |||| ||||| |||||| Sbjct 290088 ATCGAGTTCGTCGCTGACCGCCTACTCCTCG---CACTCGGCCACAGCAAGTACTACAAC 290144 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 |||| || ||||| || |||||| | ||| || || | || ||||| ||||| ||| Sbjct 290145 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTC 290204 Query 125850 GAGAAG 125855 |||||| Sbjct 290205 GAGAAG 290210 >seq176 Length=738521 Score = 145 bits (160), Expect = 1e-29 Identities = 329/487 (68%), Gaps = 11/487 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || ||||| | ||| ||||| | || || |||||||| ||| Sbjct 358648 CAGGGCGGCAACAAGCGTCCCGGCGCGTTTGCCATCTACCTTGAGCCATGGCACGCAGAC 358707 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || || |||| | || || ||| ||| || |||| || || | ||| Sbjct 358708 ATCTTGTCGTTCCTCGACCTCCGTAAGAACCACGGCAAGGAGGAGGTTCGCGCTCGTGAC 358767 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT-CAA--CGACGGTGGC 97052 |||| || ||||| ||| | || ||| | |||||||| || || ||| | ||| || Sbjct 358768 CTGTTCTACGCACTGTGGATTCCCGATCTCTTCATGAAACGTGTGCAAGACAACGCTG-- 358825 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| | |||||||| || || |||||||| |||| | || || || Sbjct 358826 -ATTGGACATTGATGTGCCCGAACGAGTGTCCCGGTCTTGCCGACGTTTACGGAGACGAA 358884 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 ||||| || ||||| |||||| || ||| | ||||||| | || | Sbjct 358885 TTTGAAGCGCTCTACACTCGATACGAGAGCGAAGGC--AAGGGTGAGACTATGCGCGCCC 358942 Query 97173 CGAGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 || || | ||| | ||||| | ||| ||||||| |||||||| | |||||||| || Sbjct 358943 AGAAAA-TCTGGTATGCCATTCTTGA-GGCTCAGACCGAGACTGGCAACCCGTACATGCT 359000 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 || || || ||| || ||||| |||||||| ||||||||||||| |||| Sbjct 359001 GTATAAAGACGCCGCCAACCGCAAGAGCAACCAGAAAAACTTGGGCACCATTCGCAGCTC 359060 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 |||||||||||| || || | |||||| || | || || || ||| || ||| ||| Sbjct 359061 CAATCTGTGCACCGAGATCATCGAGTACACCGCCCCAGATGAAGTGGCTGTATGCAATCT 359120 Query 97352 GGCATCG 97358 |||||| Sbjct 359121 TGCATCG 359127 >seq198 Length=398492 Score = 131 bits (144), Expect = 2e-25 Identities = 311/462 (67%), Gaps = 11/462 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || ||||| | ||| ||||| | || || |||||||| ||| Sbjct 354662 CAGGGTGGCAACAAGCGACCCGGCGCATTCGCCATCTACCTCGAGCCGTGGCACGCAGAC 354721 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || ||| | || ||||||| ||| ||| || |||| || || | ||| Sbjct 354722 ATCTTGTCCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGTGAC 354781 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT-CA--ACGACGGTGGC 97052 ||||| || || || ||| | || ||| | ||||||||||| || || | ||| || Sbjct 354782 TTGTTCTACGCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTGCAAGATAACGCTG-- 354839 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || |||||||| || || ||||| || ||||| | || || ||| Sbjct 354840 -ATTGGACACTGATGTGCCCGAACGAGTGCCCCGGCCTTGCCGATGTGTACGGGGATGAG 354898 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 || || || ||||| ||||| || ||| | ||||||| | || || Sbjct 354899 TTCGAAGCGCTCTACACACGGTACGAAAGCGAAGGC--AAGGGTGAGACTATGCG-CGC- 354954 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| | ||| | ||||| | ||||||| |||||||| | |||||||| || Sbjct 354955 CCAGAAGATTTGGTATGCCATTCTCGAGGCTCAGACCGAGACTGGCAACCCGTACATGCT 355014 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||| || | | || ||||| |||||||| |||||||||| || |||| Sbjct 355015 GTACAAAGACGCTGCCAACCGCAAGAGCAACCAGAAGAACTTGGGCACAATTCGCAGCTC 355074 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333 ||| ||||||| || || | |||||| || |||| ||||| Sbjct 355075 CAACTTGTGCACCGAGATCATCGAGTACACCGCTCCTGACGA 355116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056726714920