Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq228 113 4e-20 seq184 109 5e-19 >seq228 Length=1254254 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | ||| |||| ||||||||||| || || ||||| || | ||| || |||||| Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||||| ||| || || | ||||| | | ||||||||||| || Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || || || | ||| || | ||| ||| | ||| ||||| | || || Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACC 555737 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| || || || ||||| || || ||||| ||||| Sbjct 555738 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGC 94861 ||| | ||| |||||||| || | ||| || ||| | || || || ||||| ||| Sbjct 555809 GTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGG--AAAGAGTACGACCGTCCTCGAGC 555866 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| | ||||| | | ||||| |||||||||||||| || || || | || Sbjct 555867 TGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATC 555926 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | ||| ||| | ||| ||||| | | || || || | |||||||| || ||| Sbjct 555927 TTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCA 555986 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| Sbjct 555987 GTGAGGGTCTTGACGAAGATCTGCAT 556012 >seq184 Length=1511567 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||||| | || || | ||||||||||| || || ||||| || | ||| | Sbjct 735465 TTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 735524 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| ||| || ||||||| ||| || ||| | ||||| | | ||||| | Sbjct 735525 AGTCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGT 735584 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || ||||| || || || | ||| || | ||| ||| | ||| ||||| | Sbjct 735585 CTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATG 735644 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||| || || || ||||| || || || || ||||| Sbjct 735645 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | |||||| ||| | |||| | ||||| || || Sbjct 735724 GTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTG 735783 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | || || | | || || |||||||||||||| || ||||| | || || Sbjct 735784 CTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTT 735843 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | ||||||| | ||| ||||| | || || || | |||||||| || || || Sbjct 735844 CGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 735903 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 735904 GAGCGTCTTGACGAAGATCTGCAT 735927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289703828120