Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq228 100 4e-17 seq193 100 4e-17 >seq228 Length=1254254 Score = 100 bits (110), Expect = 4e-17 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||||| | || || |||||||| || ||||||||||| || || Sbjct 1096008 GCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCGAT 1095950 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || |||||||| || ||||||||| |||| Sbjct 1095949 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTC 1095911 Score = 87.8 bits (96), Expect = 3e-13 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | |||| ||||||| || || |||| || | Sbjct 1095852 TGATCTACGAGGAGACCCGCGGCGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 1095793 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| | Sbjct 1095792 CAGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 1095733 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | || ||||||||||| | | || ||||| || |||| Sbjct 1095732 CCCTCAAGCGTCAAGGCCGCACTCTGTACGGTTTCGGCGGTTA 1095690 >seq193 Length=432561 Score = 100 bits (110), Expect = 4e-17 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||||| | || || |||||||| || ||||||||||| || || Sbjct 159978 GCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCGAT 160036 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || |||||||| || ||||||||| |||| Sbjct 160037 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTC 160075 Score = 100 bits (110), Expect = 4e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| |||||| ||||||| || || |||| || | Sbjct 160136 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGACCTTCCTCGAGGGTGTCATCCGCGACG 160195 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| | Sbjct 160196 CAGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 160255 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | || ||||||||||| | | || ||||| || |||| Sbjct 160256 CACTCAAGCGTCAAGGCCGCACTCTGTACGGTTTCGGCGGTTA 160298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074955880031