Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq176 149 8e-31
seq198 147 3e-30
>seq176
Length=738521
Score = 149 bits (164), Expect = 8e-31
Identities = 431/654 (66%), Gaps = 12/654 (2%)
Strand=Plus/Minus
Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
||| || |||||| | || || | ||| || |||||||| |||| | | | | ||
Sbjct 358917 TTCGCTCTCGTATCGAGTGTAGAGCGCTTCAAATTCGTCTCCGTAAACGTCGGCAAGACC 358858
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
||||| || | ||| |||||||| | ||| || ||| || | ||| |||||||| ||
Sbjct 358857 GGGACACTCGTTCGGGCACATCAATGTCCAATCAGCGTTGTCTTGCACACGTTTCATGAA 358798
Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
|||||| |||||||| || || || || || | | | | ||||| || ||
Sbjct 358797 GAGATCGGGAATCCACAGTGCGTAGAACAGGTCACGAGCGCGAACCTCCTCCTTGCCGTG 358738
Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349
||||| || |||||||||| || || || | ||||| || || | ||| |||||
Sbjct 358737 GTTCTTACGGAGGTCGAGGAACGACAAGATGTCTGCGTGCCATGGCTCAAGGTAGATGGC 358678
Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409
| | || || || ||||| || ||||| || | |||||||| ||||| || | ||
Sbjct 358677 AAACGCGCCGGGACGCTTGTTGCCGCCCTGGTCGACATATCTAGCCGTGTTGTTGAACAC 358618
Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469
| | ||| || | | |||||| ||| | || || ||||| | || || |||| |
Sbjct 358617 CCGTAGCATGGGTACGAGACCGTTCGATGTGCCGTTTGTACCCGCAATGTACGATCCAGT 358558
Query 63470 GGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
|| ||||| || | | |||| | || || || || || |||| ||||| | |
Sbjct 358557 CGCCCGAATGCGATGTGCG--TTGA--GTCCGATGCCACCGGCGTTTTTCGAGATCATCG 358502
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
| || || | ||||| ||||||||||| || ||||| || |||||| | | |
Sbjct 358501 CACAAGTCTTCAGTGTGTCGTAGATACCCTCAATACTATCGTCCTTCATGTCGATCAAGA 358442
Query 63586 AACAGCTAGACATTTGGTG-ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
| || || || ||| | || || || | || | || || ||||| ||
Sbjct 358441 AGCA-TGAGGCAAGCTGTGCTTGTGGTGTGCCAGCGCTGAACAGCGTTGGCGAAGCATGT 358383
Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
|| || | || | || | |||| |||||||||||||| || | || || ||
Sbjct 358382 GTGAAGTACTTGTTGGACATGTAG-TTGTACGTCTCAATCGCCGCATCGATGTCTTCGCC 358324
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757
||| || || ||||| |||||||| | ||||||||| || || || ||| |||
Sbjct 358323 ATGTATACCCACTGCCACACGCATGATCATGTGCTGTGGCCTCTCCGCGACCTT 358270
Score = 100 bits (110), Expect = 4e-16
Identities = 303/465 (65%), Gaps = 5/465 (1%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||| || ||||| || || || | | ||||| || |||||||| || || || ||
Sbjct 360038 GTGAACTGGATGGGCGCCGAGGCAGCCATGGTACGGAGGTAGTACATGCCAGTCTTCAGT 359979
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
||||||| ||| ||| || ||||| ||| | ||| | | || || ||
Sbjct 359978 CCGAGACGCCAGCCGGTGAAGTGCATCGACGTGATCTTGCCCATAGTTGGCTCCTTCATG 359919
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
||||| || | || || |||||||||||||| || | ||||| | ||| | |||
Sbjct 359918 TGGATGTTGAGTGACTGGGACTGATCGATGAAGGCGCCACGATCTGCTGACATCTGGATG 359859
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62233
|| | || || ||||| | ||| || || | ||| ||| || || || ||||
Sbjct 359858 ATGTTGCGCTGGCTGATCTCCCAGACAGTCTTGTACAGCTC-CTTGATTTCATCGGGAAT 359800
Query 62234 GTTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290
||| | | | |||||| || ||||||||||| || || | ||||| || | ||| |
Sbjct 359799 GTTGGGAATGCGCTGAATTGAACCACCATCTGCAATGATGCGGTTCTTCATGTTGTCACT 359740
Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350
||| | | ||| | | |||| || ||||| || ||||| || |||||
Sbjct 359739 CCAAAGACCCATGTCGACGAGGTCCTTAAGCAGCCAAGGATTGACGACTTGGAACTCTCC 359680
Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410
| ||| || | |||| ||| ||||| ||||| ||||| || | |||| || ||
Sbjct 359679 GGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGCTCAAAGCACTCGTTGAAGCC 359620
Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455
|| || || | || || || |||||||| || || | |||
Sbjct 359619 CATGATCTGCGATGTGCTCGCTGTTGGCATAGGAGCAACGAGTAA 359575
>seq198
Length=398492
Score = 147 bits (162), Expect = 3e-30
Identities = 425/645 (66%), Gaps = 12/645 (2%)
Strand=Plus/Minus
Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
||| |||||||| |||| || | ||||||||| || || | |||| | | | ||
Sbjct 354931 TTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCC 354872
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
|| || || | ||| ||||||| | ||| || ||| ||| | ||| || ||||| ||
Sbjct 354871 GGGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGCACACGCTTCATGAA 354812
Query 63230 GAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288
||||||||| ||||| ||||| || || || || | | | ||||| || ||
Sbjct 354811 GAGATCAGGGATCCACAGAGCGTAGAACAAG-TCACGAGCGCGGACCTCCTCCTTGCCGT 354753
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
||||| || || ||||| | || || || | |||||||| || | ||| ||||
Sbjct 354752 GGTTCTTGCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGG 354693
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | || || || ||||| || ||||| || | || ||||| ||||| || | |
Sbjct 354692 CGAATGCGCCGGGTCGCTTGTTGCCACCCTGGTCGACATACCTAGCAGTGTTGTTGAACA 354633
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
| | | ||| || | | |||||||||| | ||||| ||||| | || || |||
Sbjct 354632 CCCGTAGCATGGGTACGAGACCGTTTGATGTGCCATTTGTACCCGCAATGTACGAGCCAG 354573
Query 63469 TGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524
| || ||||| || | | ||| || || || || || || |||| ||||| |
Sbjct 354572 TCGCCCGAATGCGATGTGC--GTTG--AGTCCGATGCCACCGGCGTTTTTCGAGATCATC 354517
Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584
|| || || | |||||| || || ||||| ||||| || || |||||| | ||
Sbjct 354516 GCACAAGTCTTCAGCGTGTCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGATCAGG 354457
Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
|| || || | ||| || || || || | || | || || ||||| ||
Sbjct 354456 AAGCATGAAGCAAGTTGTGCTTGAGGTGTGCCAGCGCTGAACAGCGTCGGCGAAGCATGT 354397
Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
|| || | || | || | |||| ||||||||||| || || | || || |||
Sbjct 354396 GTGAAATACTTGTTGGACATGTAG-TTGTACGTCTCGATCGCCGCATCAATGTCCTCGCC 354338
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
|| || ||||| ||||||||||| | ||||||||| || || ||
Sbjct 354337 GTGTATACCTACAGCGACACGCATGATCATGTGCTGTGGCCTCTC 354293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622945120913720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |