Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq112 163 3e-35
seq1 163 3e-35
seq228 127 2e-24
seq184 114 1e-20
seq193 111 1e-19
seq207 105 6e-18
seq204 87.8 2e-12
>seq112
Length=1778705
Score = 163 bits (180), Expect = 3e-35
Identities = 347/514 (68%), Gaps = 7/514 (1%)
Strand=Plus/Plus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143
|| || ||| | |||||||| | ||||||| | |||||||||| | | | | ||
Sbjct 1416641 ATCCCCTGCATCCGCAAGAAGGCTAACTGGGCACTAAAGTGGATCAGCGACGACGCATCG 1416700
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
|| |||| | ||| | | ||||| || ||| ||||| |||| || || |||
Sbjct 1416701 ACCTTCGGCTGCCGTCTTATCGCCTTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGCTCC 1416760
Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
|| || |||||||| | |||| | ||| ||||||||||||| ||||| ||
Sbjct 1416761 TTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCTAAT 1416820
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC 46322
||||| || ||||| ||||||||| |||| || |||||||| || | || | || |
Sbjct 1416821 GAGCTCATCTCGCGTGACGAGGGCATGCACACCGACTTTGCCTGCATGCTGC----ACGC 1416876
Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382
| | | | |||||| | | |||| ||| | || ||| ||||| || |
Sbjct 1416877 ACATCTCCGCAACAAGCCATCACTCGACCTCGTCCACCAGATCATCACCGAGGCCGTCGA 1416936
Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACA 46442
|| ||| | ||||| | ||| ||| |||||| || || || ||||||||||| |
Sbjct 1416937 GATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAA 1416996
Query 46443 GTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCACCAGC 46501
| |||||| | |||||||||||||| || ||||| || ||| | ||| || |||
Sbjct 1416997 GCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTACTCCTCGCA-CTCGGCCACA 1417055
Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561
||| | | | || ||| || || || || ||| | ||||||||||| | ||||
Sbjct 1417056 GCAAGTACTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCA 1417115
Query 46562 AAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
| || || || ||||| |||||||| || || ||
Sbjct 1417116 AGACAAACTTCTTCGAGAAGCGCGTAGGTGACTA 1417149
>seq1
Length=1805414
Score = 163 bits (180), Expect = 3e-35
Identities = 350/516 (68%), Gaps = 9/516 (2%)
Strand=Plus/Plus
Query 46083 TATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGC 46142
||| |||||| | |||||||| || ||||||| | |||||||||| | | | | |
Sbjct 289715 TATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATCAGCGACGACGCATC 289774
Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202
||| |||| | ||| | | ||||| || ||| |||||| | || || |||||
Sbjct 289775 GACCTTCGGCTGCCGTCTCATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTC 289834
Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261
|| ||||| ||||| | |||| || | |||| | ||||||||||| || || ||
Sbjct 289835 GTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGC-TGATGCCCGGCCTCACCTTCTCCA 289893
Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAAC 46320
||||||| || || || ||||||||| |||| || ||||| || ||| | || | ||
Sbjct 289894 ACGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCTGC----AC 289949
Query 46321 ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTG 46380
| | | | | |||||| | | |||| || | || ||| ||| || ||
Sbjct 289950 GCACATCTCCGCAACAAGCCATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTC 290009
Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440
| || ||| | ||||| || | | ||| || ||| || || || |||||||||||
Sbjct 290010 GAGATCGAGCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCC 290069
Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCACCA 46499
|| |||||| | ||||||||||| || || ||||| || ||| | ||| || |||
Sbjct 290070 AAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCA-CTCGGCCA 290128
Query 46500 GCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGG 46559
||| | | |||| ||| || || || || ||| | ||||||||||| | ||
Sbjct 290129 CAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGG 290188
Query 46560 CAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||| || || || ||||| |||||||| || || ||
Sbjct 290189 CAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 290224
>seq228
Length=1254254
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | ||| | ||| |||||||| || ||||||||||||
Sbjct 556014 CCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 556073
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| ||| |||| || ||||||||||| || |||
Sbjct 556074 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGG 556133
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || |||||||| ||| || ||||| | || | || |||| | ||| |
Sbjct 556134 ATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACC 556193
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225
|| | ||| | ||| || ||||| | || ||||||||
Sbjct 556194 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||||||||||||| || || | ||||||||||| ||||||||||| ||||||
Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| | |||||| || ||| |||| | ||||||||| || || |||
Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || || ||| ||| | | || | || || | || || |
Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACC 555737
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || ||||| || ||||| || |||||
Sbjct 555738 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | || || || | || | ||||| ||||| || |||||||| |||
Sbjct 555786 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 555845
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || |||||| ||||||||||| ||| |||| | ||||||||||| |||||
Sbjct 555846 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 555905
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||| | | || | || |||| |||||| |
Sbjct 555906 ATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACC 555965
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || || || ||||| ||||||||
Sbjct 555966 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| || | || | ||||||||||| || |||||||| |||
Sbjct 1165073 CCACCACGGAGGCGCAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 1165014
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || |||
Sbjct 1165013 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGG 1164954
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 1164953 ATACCCTCCTTGTC 1164940
>seq184
Length=1511567
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | ||| | ||| ||||| || || |||||||| |||
Sbjct 735929 CCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 735988
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| ||| |||| || ||||||||||| |||||
Sbjct 735989 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGA 736048
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| | ||| |
Sbjct 736049 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACC 736108
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225
|| | ||| | ||| || ||||| | ||||| |||||
Sbjct 736109 TCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| ||| ||||| || || | ||||||||||| || |||||||| ||||||
Sbjct 735473 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 735532
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | |||||| | |||||| || ||| |||| | |||||||||||| || |||
Sbjct 735533 AAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGG 735592
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || || ||| ||| | | || | || || | || || |
Sbjct 735593 ATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACC 735652
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || ||||| || |||||||| |||||
Sbjct 735653 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | || || || | || | ||||||||||| || ||||| || |||
Sbjct 735701 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAA 735760
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| || |||||||| ||| | || | ||||| ||||| |||||
Sbjct 735761 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGA 735820
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | || |||| ||||| |
Sbjct 735821 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 735880
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || ||||| || || || ||||| ||||||||
Sbjct 735881 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927
>seq193
Length=432561
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| ||||| || | ||||||||| || || |||||||| |||
Sbjct 90586 CCACCACGGAGGCGCAGGACTAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 90645
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || |||
Sbjct 90646 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGG 90705
Query 131128 ATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 90706 ATACCCTCCTTGTC 90719
>seq207
Length=296016
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||||||||||| || | | ||||| |||||||| || ||| | |
Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || |||||||| || ||||| ||| || ||||| | |
Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||||| |||| ||| | ||| || || || || || || ||||
Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104
Query 131225 A 131225
|
Sbjct 213105 A 213105
>seq204
Length=319970
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103
|||| || ||||||||||| |||| || | || | ||||| |||||||| || ||| |
Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCA-TCCTCAAGCTGCTTTCCGGCGAAA 81988
Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163
|| || ||||||||||| || |||||||| || ||||| ||| || ||||| |
Sbjct 81987 ATCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 81928
Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223
|| | || |||| ||||| | || | ||| | || || || || || || || |||
Sbjct 81927 TCGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACG 81868
Query 131224 AA 131225
||
Sbjct 81867 AA 81866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472011224657280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |