Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq184 140 2e-28
seq173 140 2e-28
seq153 140 2e-28
seq228 118 7e-22
seq227 111 1e-19
>seq184
Length=1511567
Score = 140 bits (154), Expect = 2e-28
Identities = 208/295 (71%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 6192 GCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251
||||| | |||||||||||||| ||| ||||||| |||| || || || || ||
Sbjct 993889 GCGGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAAGTGGAAGGCAAAGGC 993830
Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311
||||| || ||||||||||| |||||| | | | ||||| | ||| | ||||||
Sbjct 993829 AACGGCATCAAAACCGTCATCGTCAACCTCAGTAATGTCGCGCACCAGCTTGCACGCCCG 993770
Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371
||| |||| || || || ||||| | |||||| ||||| ||||| | | || |
Sbjct 993769 CCCAACTACGTGATCAAGTACTTCGGCTTCGAACTCGGCGCGCAGACCAACATCGACCCT 993710
Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431
|| |||| |||| ||| | ||||| | ||| | | ||| ||||||||| ||
Sbjct 993709 AAGGACGATCGCTGGATCATCAACGGTGCTCATGAAGCCAGCAAACTGCAGGACCATCTG 993650
Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
|| |||||||| |||||| ||||| ||| ||| ||| | || || |||||||
Sbjct 993649 GATGGCTTTATCGCCAAGTTCGTGCTCTGTAAGGACTGCAAGAATCCCGAGACCG 993595
>seq173
Length=618
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 503 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 562
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 563 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 597
>seq153
Length=1413
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 351 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 410
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 411 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 445
>seq228
Length=1254254
Score = 118 bits (130), Expect = 7e-22
Identities = 203/295 (69%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 6192 GCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251
||||| | |||||||||||||| ||| ||||||| |||| || || || || ||
Sbjct 206123 GCGGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAAGTGGAAGGCAAAGGC 206182
Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311
||||| || || |||||||| |||||| | | | ||||| | ||| | || ||
Sbjct 206183 AACGGCATCAAGACCGTCATCGTCAACCTCAGTAATGTCGCGCACCAGCTTGCCCGGCCC 206242
Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371
| | |||| || || |||||||| | |||||||||||| ||||| | | || | |
Sbjct 206243 CCGAACTACGTGATCAAGTATTTCGGCTTCGAACTTGGCGCGCAGACCAACATCGACCCC 206302
Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431
|| |||| |||| ||| | ||||| | || | | ||| ||||||||| ||
Sbjct 206303 AAGGACGATCGCTGGATCATCAACGGCGCTCACGAAGCCAGCAAACTGCAGGACCATCTC 206362
Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
|| |||||||| |||||| ||| | || ||| || | || || |||||||
Sbjct 206363 GATGGCTTTATCGCCAAGTTCGTGTTATGCAAGGACTGTAAGAATCCCGAGACCG 206417
>seq227
Length=146938
Score = 111 bits (122), Expect = 1e-19
Identities = 72/79 (91%), Gaps = 5/79 (6%)
Strand=Plus/Plus
Query 25918 CTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGC 25972
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 60
Query 25973 GTCACTAATTAGATGACGA 25991
|||||||||||||||||||
Sbjct 61 GTCACTAATTAGATGACGA 79
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946110060877
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |