Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq184 140 2e-28 seq173 140 2e-28 seq153 140 2e-28 seq228 118 7e-22 seq227 111 1e-19 >seq184 Length=1511567 Score = 140 bits (154), Expect = 2e-28 Identities = 208/295 (71%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 6192 GCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251 ||||| | |||||||||||||| ||| ||||||| |||| || || || || || Sbjct 993889 GCGGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAAGTGGAAGGCAAAGGC 993830 Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 ||||| || ||||||||||| |||||| | | | ||||| | ||| | |||||| Sbjct 993829 AACGGCATCAAAACCGTCATCGTCAACCTCAGTAATGTCGCGCACCAGCTTGCACGCCCG 993770 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 ||| |||| || || || ||||| | |||||| ||||| ||||| | | || | Sbjct 993769 CCCAACTACGTGATCAAGTACTTCGGCTTCGAACTCGGCGCGCAGACCAACATCGACCCT 993710 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431 || |||| |||| ||| | ||||| | ||| | | ||| ||||||||| || Sbjct 993709 AAGGACGATCGCTGGATCATCAACGGTGCTCATGAAGCCAGCAAACTGCAGGACCATCTG 993650 Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || |||||||| |||||| ||||| ||| ||| ||| | || || ||||||| Sbjct 993649 GATGGCTTTATCGCCAAGTTCGTGCTCTGTAAGGACTGCAAGAATCCCGAGACCG 993595 >seq173 Length=618 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 503 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 562 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 563 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 597 >seq153 Length=1413 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 351 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 410 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 411 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 445 >seq228 Length=1254254 Score = 118 bits (130), Expect = 7e-22 Identities = 203/295 (69%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 6192 GCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251 ||||| | |||||||||||||| ||| ||||||| |||| || || || || || Sbjct 206123 GCGGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAAGTGGAAGGCAAAGGC 206182 Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 ||||| || || |||||||| |||||| | | | ||||| | ||| | || || Sbjct 206183 AACGGCATCAAGACCGTCATCGTCAACCTCAGTAATGTCGCGCACCAGCTTGCCCGGCCC 206242 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 | | |||| || || |||||||| | |||||||||||| ||||| | | || | | Sbjct 206243 CCGAACTACGTGATCAAGTATTTCGGCTTCGAACTTGGCGCGCAGACCAACATCGACCCC 206302 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431 || |||| |||| ||| | ||||| | || | | ||| ||||||||| || Sbjct 206303 AAGGACGATCGCTGGATCATCAACGGCGCTCACGAAGCCAGCAAACTGCAGGACCATCTC 206362 Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || |||||||| |||||| ||| | || ||| || | || || ||||||| Sbjct 206363 GATGGCTTTATCGCCAAGTTCGTGTTATGCAAGGACTGTAAGAATCCCGAGACCG 206417 >seq227 Length=146938 Score = 111 bits (122), Expect = 1e-19 Identities = 72/79 (91%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 25918 CTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGC 25972 |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 1 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 60 Query 25973 GTCACTAATTAGATGACGA 25991 ||||||||||||||||||| Sbjct 61 GTCACTAATTAGATGACGA 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946110060877