Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq112 165 9e-36 >seq1 Length=1805414 Score = 174 bits (192), Expect = 2e-38 Identities = 373/557 (67%), Gaps = 3/557 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || || |||||||| || | || ||||| || || || | ||| ||| ||| || | Sbjct 289939 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGG 289880 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | ||| || || ||||||||||| || || | || || |||||| || || Sbjct 289879 CCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAA 289820 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 || || || || ||||| || || | | ||| | | || | | | | |||| Sbjct 289819 ATGCCCTCGACAGCTGCGAAGGCGATGAGACGGCAGCCGAAGGTCGATGCGTCGTCGCTG 289760 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| |||| ||||| | ||| || || || || || | | |||||||||||| Sbjct 289759 ATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATATTGTCGATAGCGTTA 289700 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || ||||| || | | | || | ||||| || ||||| | || || || | Sbjct 289699 AAGAGGTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCGATAAGTAGTGAGTAGGTC 289640 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || || |||| ||||||||| || ||||| |||||||| || | ||| || | ||| Sbjct 289639 TCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGATT 289580 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 ||||| || | ||||| ||| || || || || ||||| || || || ||||| || Sbjct 289579 TGCACCTCGCCACTAAATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGATGCGGCG 289520 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAA 93568 || || || | | ||| || || | ||| ||||| || | |||| | ||| Sbjct 289519 AAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCATTGAGACGCTTGTTCCAG 289460 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 ||| |||||||| || ||||| | || || | ||||| || ||||| ||||| || Sbjct 289459 TCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTCTGCCTTC 289400 Query 93629 TTGTACATATCCCATAT 93645 |||||||| | |||||| Sbjct 289399 TTGTACATCTGCCATAT 289383 >seq112 Length=1778705 Score = 165 bits (182), Expect = 9e-36 Identities = 374/559 (67%), Gaps = 5/559 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | || ||||| || || || | |||||| ||| || | Sbjct 1416865 GCAGGCAAAGTCGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAG 1416806 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || | ||| || || || || || Sbjct 1416805 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAA 1416746 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || ||||| || || | || ||| | | || | | | | ||| Sbjct 1416745 GATACCCTCAACAGCTGCGAAGGCGATAAGACGGCAGCCGAAGGTCGATGCGTCGTCGCT 1416686 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGT 93329 |||||| |||| ||||| | || || || || || || | |||| |||||||||| Sbjct 1416685 GATCCACTTTAGTGCCCAGTTAGCCTTCTTGCGGATGCAGGGGA-TGTTGTCGATAGCGT 1416627 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || ||||| || | | | || | ||||| || ||||| | || || || Sbjct 1416626 TGAAGAGGTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGG 1416567 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || || |||| |||||||| || ||||| |||||||| || | ||| || | | Sbjct 1416566 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGTA 1416507 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 | ||||| || | |||| ||| || || || || ||||| || || || ||||| | Sbjct 1416506 TTTGCACCTCGCCACTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCTGATGCGG 1416447 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCC 93566 | || || || | | |||| || || | ||| ||||| || | |||| | || Sbjct 1416446 CGAAGAAGGCAAGGACATGCGAAATGAAGAATCGCTCGTCATCGTTGAGACGCTTGTTCC 1416387 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | ||| || || || || ||||||| || || | ||||| |||||||| ||||| | Sbjct 1416386 AGTCGTGCAGGTCCTTCGACAGATCGATCTCCTCTGCTGTCCAGAACGATGCCTCTGCCT 1416327 Query 93627 TTTTGTACATATCCCATAT 93645 | |||||||| | |||||| Sbjct 1416326 TCTTGTACATTTGCCATAT 1416308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858941477080