Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq184 143 2e-29 seq228 129 5e-25 seq193 102 7e-17 >seq184 Length=1511567 Score = 143 bits (158), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || ||||| || ||||| || || |||| ||||| ||||| | | |||| ||| | Sbjct 736146 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 736087 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || | Sbjct 736086 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 736027 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || ||| Sbjct 736026 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAA 735967 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||| | ||| | || | || |||| || ||| Sbjct 735966 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGGT 735928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || |||| || || |||||| | | Sbjct 735699 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 735640 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| ||||| || || Sbjct 735639 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 735580 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||||| ||||| | | || | ||| |||||| Sbjct 735579 CAGCGTCTCATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTTTGAGCGACTACAAC 735520 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || | || |||| ||||| Sbjct 735519 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTACGTCTGCGTGGAGG 735473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 735927 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCC 735868 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||||||||| || || ||| Sbjct 735867 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAA 735808 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| |||||| | ||||| || ||| Sbjct 735807 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTATAAC 735748 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 735747 ATCCAGAAGGAGTCGAC 735731 >seq228 Length=1254254 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || || ||||| || || |||| ||||| ||||| | | |||| ||| | Sbjct 556231 TTCGTAAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 556172 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||| ||||| || || || || || || || | Sbjct 556171 GACAATGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCGCCAGACCAGCAGCGCTTG 556112 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | |||||| ||||||| |||||||||||||||| || || Sbjct 556111 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAG 556052 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||| | ||| | || | || |||| || ||| Sbjct 556051 GAGTCCACCCTCCATCTCGTCCTCCGTCTGCGTGGTGGT 556013 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || || |||| || || |||||| | | Sbjct 555784 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 555725 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| ||||| ||||| Sbjct 555724 GACACAATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGATCAG 555665 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||||| ||||| ||| || | ||| |||||| Sbjct 555664 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGGACGTTGAGCGACTACAAC 555605 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| ||||| ||||| Sbjct 555604 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTTTGCGTGGAGG 555558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || || || Sbjct 556012 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCC 555953 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || || |||||||||||||| || || || Sbjct 555952 GACACCATCGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCTCCAGACCAG 555893 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| || || | ||||| |||||| Sbjct 555892 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAAC 555833 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 555832 ATCCAGAAGGAATCGAC 555816 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 ||||||||||||||| ||||| || || || || | || || |||||||| ||| | || Sbjct 1164939 AGACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 1164998 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| ||||||| | ||||| |||||||| || || || || || Sbjct 1164999 GGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGAC 1165043 >seq193 Length=432561 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 ||||||||||||||| ||||| || || || || | || || |||||||| ||| | || Sbjct 90720 AGACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 90661 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 ||| ||||||| ||||||| |||||||| || ||||| || ||| | || ||||| | Sbjct 90660 GGACGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGTCGACCCTTCACTTAGTCCT 90601 Query 22431 GCGATTGCGCGGAGGT 22446 ||| | || || ||| Sbjct 90600 GCGCCTCCGTGGTGGT 90585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726634178855