Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 seq112 120 6e-22 seq182 96.9 7e-15 >seq1 Length=1805414 Score = 129 bits (142), Expect = 1e-24 Identities = 270/400 (68%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 290206 TCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 290147 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | |||| ||||| ||||| | || | |||||| || || ||||| | Sbjct 290146 GCGTTGTAGTACTTGCTGTGGCCGAGTGCGAGGAGTAGGCGGTCAGCGACGAACTCGATG 290087 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| | | | || || || | || || | | Sbjct 290086 TACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG-CAGGGTAGGGCGTCTGAAAG 290028 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || | ||| | | || || ||| | || | || | | || || | Sbjct 290027 GAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCTGGTGGACAAGGTCGAGTGATGG 289968 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| || | || || ||| | | | || | ||||| |||||||| || Sbjct 289967 CTTGTTGCGGAGATGTGCGTGCAGCATACAGGCGAAGTCGGTGTGCATGCCCTCGTCACG 289908 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||| ||||||||| | ||||| ||||||| ||| || ||| |||||||||| Sbjct 289907 GGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAA 289848 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||| ||| || || |||||||| | | ||||||||| Sbjct 289847 GATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCGACA 289808 >seq112 Length=1778705 Score = 120 bits (132), Expect = 6e-22 Identities = 268/400 (67%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 1417131 TCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1417072 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| | |||| ||||| ||||| | || | ||||| || |||||||| | Sbjct 1417071 GCATTGTAGTACTTGCTGTGGCCGAGTGCGAGGAGTAGACGGTCAGCGACAAACTCGATG 1417012 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| | | | || || || | || || | | Sbjct 1417011 TACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG-CAGGGCAGGGCGTCCGATAG 1416953 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || | ||| | | || ||||| | || | || | | || || | Sbjct 1416952 GAACTCTTGCTCGATCTCGACGGCCTCGGTGATGATCTGGTGGACGAGGTCGAGTGATGG 1416893 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| || | || || ||| | | |||| | ||||| |||||||| || Sbjct 1416892 CTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCAAAGTCGGTGTGCATGCCCTCGTCACG 1416833 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||| || || | ||||| ||||| | || || ||| |||||||||| Sbjct 1416832 CGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAA 1416773 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||| || ||||| || ||||| | | |||||| ||| Sbjct 1416772 GATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCTCAACA 1416733 >seq182 Length=708831 Score = 96.9 bits (106), Expect = 7e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||| | ||| ||||| || ||||||| ||||| ||||| || || || | Sbjct 213684 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGCCTCTCCGGTG 213625 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| | || ||| || |||| ||||| | ||||||| ||||||| Sbjct 213624 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 213566 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||||||||||| |||||||| || |||||||| Sbjct 213565 CTCGACGAGCCGACCAACTACCTCGACCGCGA 213534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833283834547