Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq184 141 2e-28 seq228 136 9e-27 seq1 95.1 3e-14 seq112 93.3 1e-13 >seq184 Length=1511567 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| || | || || || ||||| |||||||||| Sbjct 735701 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAA 735760 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| ||||| || | ||| || || ||||| || || |||||||| ||| Sbjct 735761 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTG---GTCTGGA 735817 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| |||| || ||||| || || | ||| || || Sbjct 735818 GGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCA 735877 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 735878 ACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| | || | ||||| || || || || || |||||| Sbjct 735509 TCCTTCTGGATGTTGTAGTCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAG 735568 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || |||||| || || |||||||| || |||| |||||||| Sbjct 735569 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 735628 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || ||||||||||| ||||| || || |||||||||||| Sbjct 735629 TCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 735688 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 735689 AAAATTTGCAT 735699 >seq228 Length=1254254 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| || | || ||| || ||||| || ||||||| Sbjct 555786 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 555845 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || ||||| || | || || || |||||||| || ||||| || ||| Sbjct 555846 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTG---GTCTGGA 555902 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||||||||| |||| |||||||| || || | ||| || || Sbjct 555903 GGAATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCA 555962 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 555963 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || |||||| | ||| || ||||| || || || || || |||||| Sbjct 555594 TCCTTCTGAATGTTGTAGTCGCTCAACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAG 555653 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| |||||| || || |||||||| || |||| |||||||| Sbjct 555654 ATAAGACGCTGCTGATCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 555713 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || ||||||||||| ||||| || || |||||||||||| Sbjct 555714 TCGATTGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 555773 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 555774 AAGATTTGCAT 555784 >seq1 Length=1805414 Score = 95.1 bits (104), Expect = 3e-14 Identities = 173/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150 ||| | |||||| || | ||| |||||||| ||| ||||| | || || | | Sbjct 289994 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACT 290053 Query 269151 GATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTT 269210 |||| ||||| ||| | |||||| || || ||||| ||||| ||||| || | | Sbjct 290054 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 290113 Query 269211 CACGGCACTCGGTTATGAGAAAGTG-TACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | |||||||| | || |||| ||||| | | || ||||||| ||| ||||| Sbjct 290114 CCTCGCACTCGGCCAC-AGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 290172 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 || || |||| || ||||||||||||||||| ||||| || | ||||| || Sbjct 290173 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTACCAGAAGG 290232 Query 269330 CTGGTGTAATG 269340 ||||||| ||| Sbjct 290233 CTGGTGTCATG 290243 >seq112 Length=1778705 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | | ||||| | || || | | |||| ||||| ||| | |||||| Sbjct 1416945 AAGAGTTCCTATCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGT 1417004 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTG- 269235 || || ||||| || || ||||| ||| | || |||||||| | || |||| Sbjct 1417005 GCCAGTACATCGAGTTTGTCGCTGACCGTCTACTCCTCGCACTCGGCCAC-AGCAAGTAC 1417063 Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 |||||| | | || ||||||| ||| ||||| || || |||| || ||||| ||| Sbjct 1417064 TACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACAAAC 1417123 Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 |||||||| ||||| || | ||||| ||| ||||||| ||| Sbjct 1417124 TTCTTCGAGAAGCGCGTAGGTGACTACCAAAAGGCTGGTGTCATG 1417168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650364476026