Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq184 141 2e-28
seq228 136 9e-27
seq1 95.1 3e-14
seq112 93.3 1e-13
>seq184
Length=1511567
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| ||||| || | || || || ||||| ||||||||||
Sbjct 735701 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAA 735760
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| ||||| || | ||| || || ||||| || || |||||||| |||
Sbjct 735761 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTG---GTCTGGA 735817
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || || |||||||| |||| || ||||| || || | ||| || ||
Sbjct 735818 GGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCA 735877
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 735878 ACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || |||||| | || | ||||| || || || || || ||||||
Sbjct 735509 TCCTTCTGGATGTTGTAGTCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAG 735568
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || |||||| || || |||||||| || |||| ||||||||
Sbjct 735569 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 735628
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || ||||| || ||||||||||| ||||| || || ||||||||||||
Sbjct 735629 TCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 735688
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 735689 AAAATTTGCAT 735699
>seq228
Length=1254254
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| ||||| || | || ||| || ||||| || |||||||
Sbjct 555786 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 555845
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| || || ||||| || | || || || |||||||| || ||||| || |||
Sbjct 555846 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTG---GTCTGGA 555902
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||||||||| |||| |||||||| || || | ||| || ||
Sbjct 555903 GGAATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCA 555962
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 555963 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || |||||| | ||| || ||||| || || || || || ||||||
Sbjct 555594 TCCTTCTGAATGTTGTAGTCGCTCAACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAG 555653
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| ||| |||||| || || |||||||| || |||| ||||||||
Sbjct 555654 ATAAGACGCTGCTGATCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 555713
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || ||||| || ||||||||||| ||||| || || ||||||||||||
Sbjct 555714 TCGATTGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 555773
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 555774 AAGATTTGCAT 555784
>seq1
Length=1805414
Score = 95.1 bits (104), Expect = 3e-14
Identities = 173/251 (69%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150
||| | |||||| || | ||| |||||||| ||| ||||| | || || | |
Sbjct 289994 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACT 290053
Query 269151 GATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTT 269210
|||| ||||| ||| | |||||| || || ||||| ||||| ||||| || | |
Sbjct 290054 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 290113
Query 269211 CACGGCACTCGGTTATGAGAAAGTG-TACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269
| |||||||| | || |||| ||||| | | || ||||||| ||| |||||
Sbjct 290114 CCTCGCACTCGGCCAC-AGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 290172
Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329
|| || |||| || ||||||||||||||||| ||||| || | ||||| ||
Sbjct 290173 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTACCAGAAGG 290232
Query 269330 CTGGTGTAATG 269340
||||||| |||
Sbjct 290233 CTGGTGTCATG 290243
>seq112
Length=1778705
Score = 93.3 bits (102), Expect = 1e-13
Identities = 157/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176
|||||||| | | ||||| | || || | | |||| ||||| ||| | ||||||
Sbjct 1416945 AAGAGTTCCTATCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGT 1417004
Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTG- 269235
|| || ||||| || || ||||| ||| | || |||||||| | || ||||
Sbjct 1417005 GCCAGTACATCGAGTTTGTCGCTGACCGTCTACTCCTCGCACTCGGCCAC-AGCAAGTAC 1417063
Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295
|||||| | | || ||||||| ||| ||||| || || |||| || ||||| |||
Sbjct 1417064 TACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACAAAC 1417123
Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
|||||||| ||||| || | ||||| ||| ||||||| |||
Sbjct 1417124 TTCTTCGAGAAGCGCGTAGGTGACTACCAAAAGGCTGGTGTCATG 1417168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179650364476026
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |