Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq112 131 4e-25 >seq1 Length=1805414 Score = 147 bits (162), Expect = 5e-30 Identities = 311/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 243298 CGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATC 243357 |||||| |||||| | || || || ||| | || || || ||| ||| ||| Sbjct 289788 CGTCTCATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 289847 Query 243358 TTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGT 243417 || ||||| ||| || ||||||| |||||| | || |||||| |||| Sbjct 289848 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 289907 Query 243418 CGCGACGAGGGCCTTCACCAACAGTTCG---GTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || ||||||||| | ||| | |||| || ||| | | || | |||| ||| Sbjct 289908 CGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCT---GCACGCACATCTCCGCAAC 289964 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| | || |||| ||| | || |||||||| ||||| || || | ||| | || Sbjct 289965 AAGCCATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAG 290024 Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594 ||| ||| ||||| | || ||| ||| | ||||||||| | | |||||| | ||| Sbjct 290025 TTCCTTTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAG 290084 Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT-GTACAA 243653 |||||||| ||||| || |||||| | || |||| || || | || |||| ||||| Sbjct 290085 TACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCACTCGGCCA-CAGCAAGTACTACAA 290143 Query 243654 CTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTT 243713 | ||| |||||||| | ||| |||||| ||| || || || || || |||||||| Sbjct 290144 CGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTT 290203 Query 243714 CGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 ||| ||||| || |||| || || ||||||| ||| Sbjct 290204 CGAGAAGCGCGTAGGTGACTACCAGAAGGCTGGTGTCATG 290243 >seq112 Length=1778705 Score = 131 bits (144), Expect = 4e-25 Identities = 292/436 (67%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 ||||| ||||| | || ||||| ||| |||||||| ||||| ||| || Sbjct 1416734 GTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGC 1416793 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | ||||| |||||| | ||||| ||| ||||| || ||||||||| | ||| Sbjct 1416794 CTCATGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACC 1416853 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAA 243498 | || | | || | || | |||| ||||||| | || |||| ||| | Sbjct 1416854 GACTTTGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCCAC 1416913 Query 243499 CAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGC 243558 || |||||||| || || || || | ||| | || ||| | | ||||| | || ||| Sbjct 1416914 CAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTGC 1416973 Query 243559 CGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGC 243618 ||| | ||||||||| | | |||||| | ||||||||||| || || || ||||| Sbjct 1416974 GCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCGT 1417033 Query 243619 ATTTTCATCGCGCTTGGTTATGAGAAAGT-GTACAACTCCAAGAACCCCTTTGCCTTTAT 243677 | || |||| || || | || |||| ||||| ||| |||||||| | ||| || Sbjct 1417034 CTACTCCTCGCACTCGGCCA-CAGCAAGTACTACAATGCCACCAACCCCTTCGACTTCAT 1417092 Query 243678 GGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||| ||| || || || || || ||||||||||| ||||| || |||| || || Sbjct 1417093 GGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGACTACCA 1417152 Query 243738 ACGCCCTGGTGTGATG 243753 | ||||||| ||| Sbjct 1417153 AAAGGCTGGTGTCATG 1417168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876227116450