Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq228 134 1e-26
seq184 123 3e-23
seq204 95.1 1e-14
seq207 89.7 6e-13
>seq228
Length=1254254
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | ||||||| |||||| |||| || |||||| ||||| ||||| || |
Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| ||||| |||| || | ||||||||||||||| || || |||||||| || | |||
Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160
| | |||||| ||| ||| | || | | ||| | | | ||||| ||||||||
Sbjct 555678 ATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCAC 555736
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||||||| ||||| || || ||||| || |||||||||||
Sbjct 555737 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || | ||||| || |||| || |||||||| || |||||
Sbjct 555822 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAG 555881
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
||||| ||||||||||| | || | | |||||| ||| ||| || || | |||
Sbjct 555882 ATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCA-CGTT 555940
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||| || || || |||| |||||||| ||||| || || ||||| ||
Sbjct 555941 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 556000
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 556001 GAAGATCTGCAT 556012
>seq184
Length=1511567
Score = 123 bits (136), Expect = 3e-23
Identities = 171/237 (72%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032
||||| | ||||| | | ||| | |||||| |||| || |||||| || || |||
Sbjct 735464 ATTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTG 735523
Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092
|| || || ||||| |||| || | |||||| || ||||| ||||| |||||||||
Sbjct 735524 TAGTCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGG 735583
Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCT 42151
|| | ||| | | |||||| ||| ||| | || | | ||| | | | ||||||
Sbjct 735584 TCTGGTGGGATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGA 735642
Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||||| |||| ||||||||| ||||| || || ||||| || || ||||||||
Sbjct 735643 TGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699
>seq204
Length=319970
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||||||| ||| |||| | || || |||||||| || ||||| |
Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | ||||||||||| | || | | |||||||||| ||| || |||| |
Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||||| ||| ||||| || | ||||| || |||||||| || ||||| || |
Sbjct 81926 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 81867
Query 42199 AG 42200
||
Sbjct 81866 AG 81865
>seq207
Length=296016
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || |||||||| ||| |||| | | || || |||||||| || ||||| |
Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | ||||||||||| | || | | |||||||||| ||| || |||| |
Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | |||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104
Query 42199 AG 42200
||
Sbjct 213105 AG 213106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543210987027280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |