Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq184 120 3e-22
seq228 111 2e-19
seq198 98.7 1e-15
seq176 98.7 1e-15
seq193 86.0 6e-12
>seq184
Length=1511567
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || ||||||| || || ||||| || |||||||| || |
Sbjct 735928 ACCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 735987
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| |||||| | || || |||||||||||||| | || | ||||||||||| |||||
Sbjct 735988 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGG 736047
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| ||| || | || || | |||||
Sbjct 736048 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 736107
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
|| | || | ||||||||||||||| ||||| |||||
Sbjct 736108 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||| || || || | ||||| || || || ||||| || || |
Sbjct 735700 ACCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGA 735759
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| |||| || || ||||||||||| ||||||| ||||| ||||| |||||
Sbjct 735760 AAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGG 735819
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| || || | || || | || ||
Sbjct 735820 AATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCAAC 735879
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||| | || || ||||| || |||||
Sbjct 735880 CTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927
>seq228
Length=1254254
Score = 111 bits (122), Expect = 2e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || ||||| | || || || || || ||||||||||| |
Sbjct 556013 ACCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 556072
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| |||||| | || || |||||||||||||| | || | ||||||||||| || ||
Sbjct 556073 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGG 556132
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || ||||| ||||| || || ||| ||| || | || || | |||||
Sbjct 556133 GATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 556192
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
|| | || | ||||||||||||||| || ||||||||
Sbjct 556193 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||| || || || | |||||||| || || |||||||| || |
Sbjct 555785 ACCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 555844
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || |||| || |||||||||||||| | ||||| ||||||||||| |||||
Sbjct 555845 AAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 555904
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| || || | || || || || ||
Sbjct 555905 AATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAAC 555964
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| || | || || ||||| || |||||
Sbjct 555965 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012
>seq198
Length=398492
Score = 98.7 bits (108), Expect = 1e-15
Identities = 283/433 (65%), Gaps = 8/433 (2%)
Strand=Plus/Minus
Query 153806 GTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT 153865
||| | ||| ||| |||||||||||| ||||| |||||||| | ||| | || | |||
Sbjct 355927 GTTCAGCGATTGGGACTGATCGATGAAGGCGCCACGATCGGCTGACATCTGGATGATGTT 355868
Query 153866 TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATC 153925
||| || ||||| ||||| || || | | || || |||||||| ||
Sbjct 355867 GCGCTGGCTGATCTCCCAGACAGTCTTATACAGCTCCTTGATCTCGTCGGGGATATTGGG 355808
Query 153926 AATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAA 153985
||| ||| | | ||| || | || || ||| || ||||| |||| | |
Sbjct 355807 AATGCGCTGGATAGAGCCACCATCTGCGATGATGCGGTTCTTCATGTTGTCGCTCCAGAG 355748
Query 153986 ATTTA-GTCGACATAAATCTT---CAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGG 154041
| ||||||| ||| || ||| | |||| | ||||| || |||||||
Sbjct 355747 GCCCATGTCGACAAGGTCCTTGAGCAGCCAGG----GGTTGACGACTTGGAACTCGCCGG 355692
Query 154042 CCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTA 154101
||| || || || || | ||||||||| ||||||| || | || ||| || |
Sbjct 355691 CCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCA 355632
Query 154102 ATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGT 154161
|| || | ||| |||||||||||||| ||| || | || |||||| || | || |
Sbjct 355631 TGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCAT 355572
Query 154162 GTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCC 154221
| ||| || ||| || | || |||||| |||||||| || ||| ||| ||
Sbjct 355571 GCACTGCGATCCGCGCCTTGAGGGCTTCCCAATCCCACAAGTCAGTGGGTGTCACACCCC 355512
Query 154222 ACATGTCGTATTG 154234
|||||||||||||
Sbjct 355511 ACATGTCGTATTG 355499
>seq176
Length=738521
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 154026 ACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAAC 154085
||||| || || |||||||| || || || || | |||||||||| ||||||| ||
Sbjct 359693 ACTTGGAACTCTCCGGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGCTCAAAG 359634
Query 154086 GATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAA 154145
| |||||| ||| | || || | ||| | ||||| |||||| || || | ||
Sbjct 359633 CACTCGTTGAAGCCCATGATCTGCGATGTGCTCGCTGTTGGCATAGGAGCAACGAGTAAG 359574
Query 154146 GAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTG 154205
||||| || | |||||| |||||| ||| || | || |||| | ||||||||
Sbjct 359573 GAGTTGCGAACACCGTGCACTGCAATTCGCGCCTTGAGGGCTTCCCAGTCCCACAAGTCA 359514
Query 154206 GTAGGTTGCACGTTCCACATGTCGTATTG 154234
|| ||| ||| |||||||||||||||
Sbjct 359513 GTGGGTGTCACACCCCACATGTCGTATTG 359485
>seq193
Length=432561
Score = 86.0 bits (94), Expect = 6e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||| |||| ||||| ||||| || |||||||| || | || |||||| ||||
Sbjct 90601 AGGACTAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 90660
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||||||||| | || | ||||||||||| || || || || || || |||
Sbjct 90661 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCT 90720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499643132435480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |