Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq184 120 3e-22 seq228 111 2e-19 seq198 98.7 1e-15 seq176 98.7 1e-15 seq193 86.0 6e-12 >seq184 Length=1511567 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||||| || || ||||| || |||||||| || | Sbjct 735928 ACCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 735987 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||||||||| | || | ||||||||||| ||||| Sbjct 735988 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGG 736047 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| ||| || | || || | ||||| Sbjct 736048 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 736107 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 || | || | ||||||||||||||| ||||| ||||| Sbjct 736108 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || || | ||||| || || || ||||| || || | Sbjct 735700 ACCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGA 735759 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || || ||||||||||| ||||||| ||||| ||||| ||||| Sbjct 735760 AAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGG 735819 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || | || || Sbjct 735820 AATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCAAC 735879 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 735880 CTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927 >seq228 Length=1254254 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | || || || || || ||||||||||| | Sbjct 556013 ACCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 556072 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||||||||| | || | ||||||||||| || || Sbjct 556073 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGG 556132 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| ||||| || || ||| ||| || | || || | ||||| Sbjct 556133 GATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 556192 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 || | || | ||||||||||||||| || |||||||| Sbjct 556193 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || || | |||||||| || || |||||||| || | Sbjct 555785 ACCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 555844 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || |||||||||||||| | ||||| ||||||||||| ||||| Sbjct 555845 AAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 555904 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || || || || Sbjct 555905 AATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAAC 555964 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || ||||| || ||||| Sbjct 555965 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012 >seq198 Length=398492 Score = 98.7 bits (108), Expect = 1e-15 Identities = 283/433 (65%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 153806 GTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT 153865 ||| | ||| ||| |||||||||||| ||||| |||||||| | ||| | || | ||| Sbjct 355927 GTTCAGCGATTGGGACTGATCGATGAAGGCGCCACGATCGGCTGACATCTGGATGATGTT 355868 Query 153866 TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATC 153925 ||| || ||||| ||||| || || | | || || |||||||| || Sbjct 355867 GCGCTGGCTGATCTCCCAGACAGTCTTATACAGCTCCTTGATCTCGTCGGGGATATTGGG 355808 Query 153926 AATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAA 153985 ||| ||| | | ||| || | || || ||| || ||||| |||| | | Sbjct 355807 AATGCGCTGGATAGAGCCACCATCTGCGATGATGCGGTTCTTCATGTTGTCGCTCCAGAG 355748 Query 153986 ATTTA-GTCGACATAAATCTT---CAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGG 154041 | ||||||| ||| || ||| | |||| | ||||| || ||||||| Sbjct 355747 GCCCATGTCGACAAGGTCCTTGAGCAGCCAGG----GGTTGACGACTTGGAACTCGCCGG 355692 Query 154042 CCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTA 154101 ||| || || || || | ||||||||| ||||||| || | || ||| || | Sbjct 355691 CCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCA 355632 Query 154102 ATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGT 154161 || || | ||| |||||||||||||| ||| || | || |||||| || | || | Sbjct 355631 TGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCAT 355572 Query 154162 GTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCC 154221 | ||| || ||| || | || |||||| |||||||| || ||| ||| || Sbjct 355571 GCACTGCGATCCGCGCCTTGAGGGCTTCCCAATCCCACAAGTCAGTGGGTGTCACACCCC 355512 Query 154222 ACATGTCGTATTG 154234 ||||||||||||| Sbjct 355511 ACATGTCGTATTG 355499 >seq176 Length=738521 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 154026 ACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAAC 154085 ||||| || || |||||||| || || || || | |||||||||| ||||||| || Sbjct 359693 ACTTGGAACTCTCCGGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGCTCAAAG 359634 Query 154086 GATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAA 154145 | |||||| ||| | || || | ||| | ||||| |||||| || || | || Sbjct 359633 CACTCGTTGAAGCCCATGATCTGCGATGTGCTCGCTGTTGGCATAGGAGCAACGAGTAAG 359574 Query 154146 GAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTG 154205 ||||| || | |||||| |||||| ||| || | || |||| | |||||||| Sbjct 359573 GAGTTGCGAACACCGTGCACTGCAATTCGCGCCTTGAGGGCTTCCCAGTCCCACAAGTCA 359514 Query 154206 GTAGGTTGCACGTTCCACATGTCGTATTG 154234 || ||| ||| ||||||||||||||| Sbjct 359513 GTGGGTGTCACACCCCACATGTCGTATTG 359485 >seq193 Length=432561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| ||||| ||||| || |||||||| || | || |||||| |||| Sbjct 90601 AGGACTAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 90660 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || | ||||||||||| || || || || || || ||| Sbjct 90661 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCT 90720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643132435480