Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq176 174 2e-38 seq112 172 5e-38 seq1 145 8e-30 seq228 105 7e-18 seq184 102 8e-17 >seq176 Length=738521 Score = 174 bits (192), Expect = 2e-38 Identities = 741/1140 (65%), Gaps = 38/1140 (3%) Strand=Plus/Minus Query 153030 TTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGT 153089 ||||| ||||| ||||| || ||||| || || | | || | |||||| ||| | || Sbjct 359699 TTGACGACTTGGAACTCTCCGGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGC 359640 Query 153090 TCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACC 153149 |||||| | ||||| ||| | || || | ||| | || || ||||| || || Sbjct 359639 TCAAAGCACTCGTTGAAGCCCATGATCTGCGATGTGCTCGCTGTTGGCATAGGAGCAACG 359580 Query 153150 AACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGT-CCTTCAACGCCTGCCAATCCCA 153208 | || || || || | |||||| || ||| ||| |||| | || | ||| ||||| Sbjct 359579 AGTAAGGAGTTGCGAACACCGTGCACTGCAAT-TCGCGCCTTGAGGGCTTCCCAGTCCCA 359521 Query 153209 CAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACT 153268 || | | |||||| | |||||||||||| || | | | || | | |||| Sbjct 359520 CAAGTCAGTGGGTGTCACACCCCACATGTCGTATTGGAGCTCGCCCTGTGAGATGGGAGA 359461 Query 153269 GCCGGCAAACGTACTGTAGCTGCCGTCGCGT-TGGGCCAGTTCGCAGCTAGCCTCGAGCG 153327 ||| | | || |||| ||| || | | || || || || || || | Sbjct 359460 GCCAGGGTAGGTCTCGTAGGGACCGA-GCTTCTCAGCAAGGTCACAAGATGCAGTAAGTG 359402 Query 153328 CGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGT 153387 || | | ||| ||||| ||| ||| || | |||||||| ||||| | |||| Sbjct 359401 CGGCGTGGTACATGGTCTCGAAGATCTGCTGATTGAGAAGACGAGCTTCCTTAGACTCGA 359342 Query 153388 ACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 | ||||||||||| ||| | ||||||||| |||||||| || ||| | || || || Sbjct 359341 ATGGCATGCGCAG-AGCGAGAAAGGCGTCAGCCAGACCGCTGACACCAAGACCAATTGGC 359283 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATAAT 153505 | || | ||||||| | || || | | || || | ||| ||||| || Sbjct 359282 CTGTGTCGCATGTTGCTGTTGCGAGCT-TCAATCACCGGGTACTTGTTGACTTCGATGAT 359224 Query 153506 TTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGT 153565 ||||| |||||||| || || | || | | | | || |||| ||| || || || Sbjct 359223 CTTGTTCAGGTTGCGAGTGACGACCTGTGTGACCTCGTGGAGCTTCTTGAAGTCGTATGT 359164 Query 153566 CATTTCGTCGACGCGTA-CG-CATCGATTC--ACGGCAATAGACGCCAGATTACAGACGG 153621 | | | || | || || ||| || | || | || || ||||| || || | Sbjct 359163 C--TGCTTCT--GAATATCGACATATGTTGGGAGTGCCAACGATGCAAGATTGCATACAG 359108 Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 || || || | | || |||||| | |||||||| ||| || ||| || ||| Sbjct 359107 CCACTTCATCTGGGGCGGTGTACTCGATGATCTCGGTGCACAGATTGGAGCTGCGAATGG 359048 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 |||||| |||| ||| ||||| ||||| ||| |||||||| | ||||||||||| Sbjct 359047 TGCCCAAGTTTTTCTGGTTGCTCTTGCGGTTGGCGGCGTCTTTATACAGCATGTACGGGT 358988 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTC--CTGCGCTCGCACCCG 153799 ||| |||||| || | || | || | || ||| | ||| || |||| Sbjct 358987 TGCCAGTCTCGGTCTGAGCCTCAAGAATGG-CATAC-CAGATTTTCTGGGCGCGCATAGT 358930 Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGC-TCAAACTCGTCGCCGT 153858 || | | || | |||||||||||||| ||| || ||| ||||| ||||| |||| Sbjct 358929 CTCACCCTTGC---CTTCGCTCTCGTATCGAGTGTAGAG-CGCTTCAAATTCGTCTCCGT 358874 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918 | |||||| || |||||||||| | ||| ||||||| | ||| | ||| | | | Sbjct 358873 AAACGTCGGCAAGACCGGGACACTCGTTCGGGCACATCAATGTCCAATCAGCGTTGTCTT 358814 Query 153919 TGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC 153978 || ||| |||||| ||||| || | ||| || ||||| | ||||| || || || Sbjct 358813 GCACACGTTTCATGAAGAGATCGGGAATCCACAGTGCGTAGAACAGGTCACGAGC---GC 358757 Query 153979 AATCCTCCGC--GCCCATGTTGCGTTTC--AGATTGA-GCACGCTATAGATGTCGGCGTG 154033 | ||||| | || || | | || | || | || | ||| | ||||||| ||||| Sbjct 358756 GAACCTCCTCCTTGCCGTGGTTC-TTACGGAGGTCGAGGAACGACA-AGATGTCTGCGTG 358699 Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090 ||| || |||| ||||| ||| | || || |||| || |||||||| ||||| | Sbjct 358698 CCATGGCTCAAGGTAGATGGCAAACGCGCCGGGACGCTTGTTGCCGCCCTGGTCGACATA 358639 Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | || | |||||||| || || | ||||||| | || ||| | | |||||||| || Sbjct 358638 TCTAGCCGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTTCGATGTGCCGTTTGT 358579 >seq112 Length=1778705 Score = 172 bits (190), Expect = 5e-38 Identities = 361/528 (68%), Gaps = 19/528 (4%) Strand=Plus/Plus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCG 52377 |||| || | || ||| | ||||| |||||| | |||||| | ||||||||| |||| Sbjct 1416633 TCGACAACATCCCCTGCATCCGCAAGAAGGCTAACTGGGCACTAAAGTGGATC---AGCG 1416689 Query 52378 ACACCGCCACG--CT--GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttt 52433 || ||| || || ||| | || | | |||||||| || ||||| | || Sbjct 1416690 ACGACGCATCGACCTTCGGCTGC-CGTCTTATCGCCTTCGCAGCTGTTGAGGGTATCTTC 1416748 Query 52434 ttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTG 52493 || |||||| ||| || |||||||| | | || | | ||| | ||||||||||| Sbjct 1416749 TTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTC 1416808 Query 52494 ACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 |||||| || ||| | || ||||| ||||| || ||||||| |||||||| ||| | Sbjct 1416809 ACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACCGACTTTGCCTGCATG 1416868 Query 52554 TACTACAAGACGCGCGTGACCGAAAAATTGGAT---TCGGACACGATCCTGAGCATGTTC 52610 || || ||| | | ||| || | || ||| | || | || || || Sbjct 1416869 --CTGCA---CGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCCACCAG-ATCATC 1416922 Query 52611 AAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTG 52670 | ||||| || | ||||| | ||||| | ||| ||| ||||| || || || Sbjct 1416923 ACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTGCGCACTTCTC 1416982 Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT- 52729 ||||||||||| || ||||||| |||||||||||||||| || || ||||| | | Sbjct 1416983 GGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTACTCCTC 1417042 Query 52730 GCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 ||| ||||| || ||||||| ||| || ||| || || || || ||| | ||||| Sbjct 1417043 GCA-CTCGGCCACAGCAAGTACTACAATGCCACCAACCCCTTCGACTTCATGGAGAACAT 1417101 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || | |||||||| ||||| ||||||||||| || || || || Sbjct 1417102 CTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGACTA 1417149 >seq1 Length=1805414 Score = 145 bits (160), Expect = 8e-30 Identities = 349/519 (67%), Gaps = 23/519 (4%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 |||||| | ||||| ||||| | |||||| | ||||||||| |||||| ||| || Sbjct 289719 CCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATC---AGCGACGACGCATCG 289775 Query 52389 --CT--GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || ||| | || | | |||||||| ||||||||| | || || || || Sbjct 289776 ACCTTCGGCTGC-CGTCTCATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTC 289834 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || ||||| ||||| | | || | | || | ||||||||||| || ||| ||| Sbjct 289835 GTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAA 289894 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGAC 52564 |||| | || || || ||||| || ||||||| ||||| || || | | || || | Sbjct 289895 CGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTG--TATGCTGCA---C 289949 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCA-----TGTTCAAGGAGGCG 52619 || | | ||| || | || || ||| | || || | ||| ||| || Sbjct 289950 GCACATCTCCGCAACAAGCCATC---ACTCGACCTTGTCCACCAGATCATCACGGAAGCT 290006 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 || | ||||| | ||||| || | | ||| || || || || || ||||||||| Sbjct 290007 GTCGAGATCGAGCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAAC 290066 Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGG 52738 || || ||||||| ||||||||||||| || || || || || | | ||| ||||| Sbjct 290067 GCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCA-CTCGG 290125 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || ||||||| |||||| ||| || || || || ||| | ||||| || || | Sbjct 290126 CCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGC 290185 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||| ||||| ||||||||||| || || || || Sbjct 290186 CGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 290224 >seq228 Length=1254254 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||||| || || || | | |||||||| |||||||||||||||||| Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || ||||| | |||| |||||||| || || || || Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | || | ||| || | ||||| | || |||| Sbjct 555678 ATACCCTCCTTATC-CTGAATCTTCGACTTCACGTTG-TCGATTGTGTCTGATGATTCCA 555735 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | || || || || ||||| || || || || ||||| Sbjct 555736 CCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | |||||| ||||||||| || || |||| Sbjct 555819 GATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCG 555878 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| ||||| ||||| || || || ||| || || | Sbjct 555879 AAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCACG 555938 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || ||||| || || || Sbjct 555939 TTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 555998 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 555999 ACGAAGATCTGCAT 556012 >seq184 Length=1511567 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | |||||||| || ||||||||||||||| Sbjct 735473 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 735532 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | || || |||| |||| |||||||| ||||| || || Sbjct 735533 AAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGG 735592 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | || | ||| || | ||||| | || |||| Sbjct 735593 ATACCCTCCTTATC-CTGAATCTTCGACTTCACGTTG-TCGATCGTGTCTGATGATTCCA 735650 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | || || || || ||||| || || ||||| ||||| Sbjct 735651 CCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| | ||| || |||||||||||| || |||| Sbjct 735734 GACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 735793 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||||||||| ||||| ||||| || ||||| ||| || || | Sbjct 735794 AAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACG 735853 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || || || || || || Sbjct 735854 TTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTG 735913 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 735914 ACGAAGATCTGCAT 735927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260743724240