Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq112 118 1e-21
seq184 114 1e-20
seq228 111 1e-19
seq1 100 3e-16
seq207 93.3 4e-14
seq198 84.2 2e-11
>seq112
Length=1778705
Score = 118 bits (130), Expect = 1e-21
Identities = 359/542 (66%), Gaps = 21/542 (4%)
Strand=Plus/Plus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| | |||| | ||| |||||| | |||| ||||| | ||||| | |||
Sbjct 1416620 CTCTTCAACGCTATCGACAACATCCCCTGCATCCGCAAGAAGGCTAACTGGGCACTAAAG 1416679
Query 47106 TACATTGAAAACGAA--AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCG 47163
| || |||| | || | || ||| | ||| | ||||| ||||| || |
Sbjct 1416680 TGGATCAGCGACGACGCATCGACCTTC-GGCTGC-CGTCTTATCGCCTTCGCAGCTGTTG 1416737
Query 47164 AGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTA 47223
|||| |||||||||| ||| ||| || || || || | | || | || | |
Sbjct 1416738 AGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 1416797
Query 47224 TGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACT 47283
|||||||||||||||| || ||||| |||||| | ||||| ||| |||||||| |||
Sbjct 1416798 TGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACCGACT 1416857
Query 47284 TTGCCTGTCT-CTACTACAACACTAGAGTCG-ATCAAAAGTTGGACGTGCCCACCGTCAG 47341
||||||| | || | || ||| | || | ||| | || | || ||||
Sbjct 1416858 TTGCCTGCATGCTGC-AC-GCAC-ATCTCCGCAACAAGCCAT-CACTCGACC-TCGTCCA 1416912
Query 47342 CGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA 47401
| | || | |||| ||||||| || ||| ||||| | | || || ||||||
Sbjct 1416913 CCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTG 1416972
Query 47402 ATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCG 47461
| | | || |||||||| || | ||| | |||||||||| |||||||| |||||
Sbjct 1416973 CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCG 1417032
Query 47462 CCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516
|| ||| | || || | || |||| ||| | || || || |||||
Sbjct 1417033 TCTACTCCTCGCACTCGGCCACAG-----CAAGTACTACAATGCCACCAACCCCTTCGAC 1417087
Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576
|| ||| | ||||| || |||| |||||||| ||||| |||||||||||||| || ||
Sbjct 1417088 TTCATGGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGAC 1417147
Query 47577 TA 47578
||
Sbjct 1417148 TA 1417149
>seq184
Length=1511567
Score = 114 bits (126), Expect = 1e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || ||||| ||| | ||||| ||| || ||||| || ||
Sbjct 735959 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 736018
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| |||||||||||||| ||| || ||||
Sbjct 736019 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 736078
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||||| || || | ||| | || |||||||||| |||
Sbjct 736079 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 736138
Query 127097 TTTACAAA 127104
|| || ||
Sbjct 736139 TTGACGAA 736146
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || || || ||| | ||||| || || || || || ||
Sbjct 735731 GTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 735790
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | ||||| || || ||||| || |||||||||||| ||| ||| ||||
Sbjct 735791 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 735850
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | ||| || |||| ||| | || |||||||| || ||
Sbjct 735851 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGCGT 735909
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 735910 CTTGACGAAGATCTGCAT 735927
>seq228
Length=1254254
Score = 111 bits (122), Expect = 1e-19
Identities = 168/235 (71%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
|||||| || || || || |||| |||||| || | ||| ||||| || ||||| |||||
Sbjct 555552 TACTGC-CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 555610
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|||| || ||| || || || | ||| || |||||| |||| | |||||||||||
Sbjct 555611 GTCGCTCAACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATC 555670
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
|| || || |||||||| ||| || ||| ||| | |||| |||| ||||| |
Sbjct 555671 TGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG-TCGATTGTGTCTGATG 555729
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || |||| || | || ||||| || ||||| || || || || |||||
Sbjct 555730 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
>seq1
Length=1805414
Score = 100 bits (110), Expect = 3e-16
Identities = 294/452 (65%), Gaps = 27/452 (6%)
Strand=Plus/Plus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
||| | ||||| ||||| ||||||||| | |||||||| || || || || ||
Sbjct 289788 CGTCTCATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 289847
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | | || | || | |||||||||||||| || ||||||||| || ||
Sbjct 289848 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 289907
Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACA------CTAGAGT 47311
| ||||| ||| |||||||| |||| |||||| | || | ||| | | |
Sbjct 289908 CGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAG 289967
Query 47312 CGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371
| |||| | | | || ||||| | || | | ||||| |||| || ||
Sbjct 289968 CCATCAC---TCGACCTTGTCCACC-------AGATCATCACGGAAGCTGTCGAGATCGA 290017
Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431
| ||||| | | || || || ||| | | | || |||||||| || | ||
Sbjct 290018 GCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCAT 290077
Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCTAAAGTATCCC 47486
| | |||||||||| || ||||| |||||||| ||| | || || | || |
Sbjct 290078 GTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCACTCGGCCACAG-----C 290132
Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546
||| ||| || || || || ||||| || ||| | ||||| || |||| ||||||
Sbjct 290133 AAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAG 290192
Query 47547 ACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|| ||||| |||||||||||||| || || ||
Sbjct 290193 ACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 290224
>seq207
Length=296016
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || |||||||||| || || | ||| || ||||| ||||| ||| | |||
Sbjct 212927 TTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAATC 212986
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| || || || || |||||||||||| ||| || ||||| | |||
Sbjct 212987 AACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 213046
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||||| |||||| |||| ||| | || ||||| || || || || || ||
Sbjct 213047 ATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 213105
>seq198
Length=398492
Score = 84.2 bits (92), Expect = 2e-11
Identities = 125/175 (71%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || ||| |||||| || | ||||||| || || ||||||||||| || ||
Sbjct 355744 CATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACTTGGAACTCGCCGGCCAGGAC 355685
Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152
|| | ||| || | |||||||||| ||||||| || |||| ||| || | ||||
Sbjct 355684 ACGAC-GAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCATGATCT 355626
Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207
||| || | || || ||||| ||| || |||| |||||| | ||||| ||
Sbjct 355625 GCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCATG 355571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499213016080
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