Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq112 118 1e-21 seq184 114 1e-20 seq228 111 1e-19 seq1 100 3e-16 seq207 93.3 4e-14 seq198 84.2 2e-11 >seq112 Length=1778705 Score = 118 bits (130), Expect = 1e-21 Identities = 359/542 (66%), Gaps = 21/542 (4%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| | |||| | ||| |||||| | |||| ||||| | ||||| | ||| Sbjct 1416620 CTCTTCAACGCTATCGACAACATCCCCTGCATCCGCAAGAAGGCTAACTGGGCACTAAAG 1416679 Query 47106 TACATTGAAAACGAA--AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCG 47163 | || |||| | || | || ||| | ||| | ||||| ||||| || | Sbjct 1416680 TGGATCAGCGACGACGCATCGACCTTC-GGCTGC-CGTCTTATCGCCTTCGCAGCTGTTG 1416737 Query 47164 AGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTA 47223 |||| |||||||||| ||| ||| || || || || | | || | || | | Sbjct 1416738 AGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 1416797 Query 47224 TGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACT 47283 |||||||||||||||| || ||||| |||||| | ||||| ||| |||||||| ||| Sbjct 1416798 TGCCCGGCCTCACGTTCTCTAATGAGCTCATCTCGCGTGACGAGGGCATGCACACCGACT 1416857 Query 47284 TTGCCTGTCT-CTACTACAACACTAGAGTCG-ATCAAAAGTTGGACGTGCCCACCGTCAG 47341 ||||||| | || | || ||| | || | ||| | || | || |||| Sbjct 1416858 TTGCCTGCATGCTGC-AC-GCAC-ATCTCCGCAACAAGCCAT-CACTCGACC-TCGTCCA 1416912 Query 47342 CGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA 47401 | | || | |||| ||||||| || ||| ||||| | | || || |||||| Sbjct 1416913 CCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCCTGCCCTG 1416972 Query 47402 ATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCG 47461 | | | || |||||||| || | ||| | |||||||||| |||||||| ||||| Sbjct 1416973 CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGACCG 1417032 Query 47462 CCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516 || ||| | || || | || |||| ||| | || || || ||||| Sbjct 1417033 TCTACTCCTCGCACTCGGCCACAG-----CAAGTACTACAATGCCACCAACCCCTTCGAC 1417087 Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576 || ||| | ||||| || |||| |||||||| ||||| |||||||||||||| || || Sbjct 1417088 TTCATGGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAGGTGAC 1417147 Query 47577 TA 47578 || Sbjct 1417148 TA 1417149 >seq184 Length=1511567 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 735959 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 736018 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| |||||||||||||| ||| || |||| Sbjct 736019 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 736078 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| || || | ||| | || |||||||||| ||| Sbjct 736079 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 736138 Query 127097 TTTACAAA 127104 || || || Sbjct 736139 TTGACGAA 736146 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || || || ||| | ||||| || || || || || || Sbjct 735731 GTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 735790 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || || ||||| || |||||||||||| ||| ||| |||| Sbjct 735791 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 735850 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || |||| ||| | || |||||||| || || Sbjct 735851 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGCGT 735909 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 735910 CTTGACGAAGATCTGCAT 735927 >seq228 Length=1254254 Score = 111 bits (122), Expect = 1e-19 Identities = 168/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| || || || || |||| |||||| || | ||| ||||| || ||||| ||||| Sbjct 555552 TACTGC-CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 555610 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| || ||| || || || | ||| || |||||| |||| | ||||||||||| Sbjct 555611 GTCGCTCAACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATC 555670 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||| ||| || ||| ||| | |||| |||| ||||| | Sbjct 555671 TGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG-TCGATTGTGTCTGATG 555729 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||| || | || ||||| || ||||| || || || || ||||| Sbjct 555730 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 >seq1 Length=1805414 Score = 100 bits (110), Expect = 3e-16 Identities = 294/452 (65%), Gaps = 27/452 (6%) Strand=Plus/Plus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| | ||||| ||||| ||||||||| | |||||||| || || || || || Sbjct 289788 CGTCTCATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 289847 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | |||||||||||||| || ||||||||| || || Sbjct 289848 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 289907 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTACAACA------CTAGAGT 47311 | ||||| ||| |||||||| |||| |||||| | || | ||| | | | Sbjct 289908 CGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAG 289967 Query 47312 CGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGA 47371 | |||| | | | || ||||| | || | | ||||| |||| || || Sbjct 289968 CCATCAC---TCGACCTTGTCCACC-------AGATCATCACGGAAGCTGTCGAGATCGA 290017 Query 47372 GATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGAT 47431 | ||||| | | || || || ||| | | | || |||||||| || | || Sbjct 290018 GCAAGAGTTCCTTTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCAT 290077 Query 47432 GAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-----TCAGCTAAAGTATCCC 47486 | | |||||||||| || ||||| |||||||| ||| | || || | || | Sbjct 290078 GTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCACTCGGCCACAG-----C 290132 Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546 ||| ||| || || || || ||||| || ||| | ||||| || |||| |||||| Sbjct 290133 AAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAG 290192 Query 47547 ACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||||| |||||||||||||| || || || Sbjct 290193 ACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 290224 >seq207 Length=296016 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || |||||||||| || || | ||| || ||||| ||||| ||| | ||| Sbjct 212927 TTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAATC 212986 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || || |||||||||||| ||| || ||||| | ||| Sbjct 212987 AACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 213046 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||||||| |||||| |||| ||| | || ||||| || || || || || || Sbjct 213047 ATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 213105 >seq198 Length=398492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||||| || | ||||||| || || ||||||||||| || || Sbjct 355744 CATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACTTGGAACTCGCCGGCCAGGAC 355685 Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 || | ||| || | |||||||||| ||||||| || |||| ||| || | |||| Sbjct 355684 ACGAC-GAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCATGATCT 355626 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||| || | || || ||||| ||| || |||| |||||| | ||||| || Sbjct 355625 GCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCATG 355571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499213016080