Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq112 140 4e-28 seq1 132 6e-26 seq198 131 2e-25 >seq112 Length=1778705 Score = 140 bits (154), Expect = 4e-28 Identities = 531/815 (65%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||||||||| || ||||| ||| |||||||| Sbjct 1417150 GTAGTCACCTACGCGCTTCTCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCTCCAT 1417091 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | || | | ||| || || | | | ||| ||| Sbjct 1417090 GAAGTCGAAGGGGTTGGTGGCATTGTAGTACTTGCTGTGGCCG-AGTGCGAG-GAGTAGA 1417033 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||| ||||||| |||| || | |||||| |||| || Sbjct 1417032 CGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG 1416973 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || |||||| | | |||| | | ||| || || || || || | ||| | Sbjct 1416972 CAGGGCAGGGCGTCCGATAGGAACTCTTGCTCGATCTCGACGGCCTCGGTGATGATCTGG 1416913 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAA-GT-CTTGAAGAGTTCCACAGCAAACT 127526 || | ||| | || | ||||| | | || | || || | | ||||| | Sbjct 1416912 TGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAG--GCAAAGT 1416855 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| | ||||||||||| |||||||| ||||| ||||| || || ||||||| Sbjct 1416854 CGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCATGA 1416795 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||| | |||||| || ||| || ||||| ||||||||||| ||||| | Sbjct 1416794 GGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCTCAA 1416735 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC-AAACCACTTC 127705 || ||||| || | ||||| | | |||| || | | || | | |||||| Sbjct 1416734 CAGCTGCGAAGGCGATAAGACGGCAGCCGAAGG-TCGATGCGTCGTCGCTGATCCACTTT 1416676 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA-GTTC 127764 | ||||| | ||||| || ||| || |||| | | | ||| || | |||| || Sbjct 1416675 AGTGCCCAGTTAGCCTTCTTGCGGATGCAGGGGATGTTGTCGATAGCGTTGAAGAGGTAT 1416616 Query 127765 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 127824 | | || || || || ||||||| | || |||||| ||| || || ||| ||| Sbjct 1416615 GTGCGTTGGCGA-GGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGAGTG 1416557 Query 127825 GACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 127883 || | | ||| || | ||| | ||||||| |||| || ||| ||| || |||| Sbjct 1416556 GATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGTATTTGCACCT 1416498 Query 127884 CATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 127942 | | | ||| | | | ||||| ||||| || || || | || || || Sbjct 1416497 C-GCCACTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCTGATGCGGCGAAGAAG 1416439 Query 127943 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCG 127999 || |||| || | ||||| | || | ||||| | | | |||||||||| Sbjct 1416438 GCAAGGACATGCGAAATGAAGAATCGCTCGTCATCGTTGAGACGCTTGTTCCAGTCGTGC 1416379 Query 128000 AGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || ||||| || ||||| | |||||| || ||||| Sbjct 1416378 AGGTCCTTCGACAGATCGATCTCCTCTGCTGTCCA 1416344 >seq1 Length=1805414 Score = 132 bits (146), Expect = 6e-26 Identities = 300/443 (68%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || ||||| ||| |||||||| Sbjct 290225 GTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCAT 290166 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | ||| | | ||| || || | | | ||| || Sbjct 290165 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGCCG-AGTGCGAG-GAGTAGG 290108 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| |||| || | |||||| |||| || Sbjct 290107 CGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG 290048 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || ||||| | | |||| | | ||| || || ||||||||| | ||| | Sbjct 290047 CAGGGTAGGGCGTCTGAAAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCTGG 289988 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAA-GT-CTTGAAGAGTTCCACAG-CAAAC 127525 || | | ||| | || | ||||| | | || | || || | |||| | || Sbjct 289987 TGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCAT---ACAGGCGAAG 289931 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| | |||||||||||||| ||||| || || |||||| || || ||||| Sbjct 289930 TCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATC 289871 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || || || || ||||||||||| || ||||| Sbjct 289870 AGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCG 289811 Query 127646 ACACACGCGAACGCAAATAGACG 127668 ||| ||||| || | ||||| Sbjct 289810 ACAGCTGCGAAGGCGATGAGACG 289788 >seq198 Length=398492 Score = 131 bits (144), Expect = 2e-25 Identities = 1092/1742 (63%), Gaps = 56/1742 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || |||||||| || | |||| | | ||||| || | Sbjct 356019 CGGAGGTAGTACATGCCAGTCTTGAGTCCTAGACGCCAGCCGGTGAAGTGCATGGACGTG 355960 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | || || | |||| || ||||| |||||| |||||||||||| Sbjct 355959 ATCTTGCCCATCGTCGGCTCCTTCATGTGGATGTTCAGCGATTGGGACTGATCGATGAAG 355900 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || ||||| || | ||| | || | | | |||| ||||| ||||| | Sbjct 355899 GCGCCACGATCGGCTGACATCTGGATGATGTTGCGCTGGCTGATCTCCCAGACAGTCTTA 355840 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || | ||| || || || ||||||| || |||||||||||||| | | Sbjct 355839 TACAGCTCCTTGATCTCGTCGGGGATATTGGGAATGCGCTGGATAGAGCCACCATCTGCG 355780 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----C 115853 | ||| | | |||||| | | |||||| || || | || |||| | | Sbjct 355779 ATGATGCGGTTCTTCATGTTGTCGCTCCAGAGGCCCATGTCGACAAGGTCCTTGAGCAGC 355720 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGG 115912 ||| | ||||| || ||||| || || ||| || | ||| ||||||||| Sbjct 355719 CAGGGG----TTGACGACTTGGAACTCGCCGGCCAGGACACGACG-AGAGTAGATGTTGC 355665 Query 115913 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 115972 | ||||| |||||||||||||||||| |||| ||| || | |||| |||||||||| Sbjct 355664 TGGTGTACGGCTCAAAGCACTCATTGAACCCCATGATCTGCGATGTGCTTGCTGTGGGCA 355605 Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGT 116032 | || || | ||| || |||||||| || | | || || |||||||||| | Sbjct 355604 TAGGCGCGACGAGCAGAGAGTTGCGGACGCCATGCACTGCGATCCGCGCCTTGAGGGCTT 355545 Query 116033 CCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTG 116090 |||| | | | | || | || || | | ||||||| || | ||||| || || Sbjct 355544 CCCAATCCCACAAGTCAG-TGGGTGTCACAC-CCCACATGTCGTATTGGAGCTCGCCCTG 355487 Query 116091 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 116150 || || || || | ||||| || ||||| ||| || | ||| | Sbjct 355486 TGAAATGGGGGAGCCAGGGTAAGTCTCGTAAGGGCCAAGCTTCTCAGCGAGATCGCAAGA 355427 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 116210 || || || ||||| || || ||||| || || | ||| | || || Sbjct 355426 TGCTGTCAGTGCGGCGTGGTAGATGGTCTCGAAGATCTGCTGATTGAGGAGACGAGCTTC 355367 Query 116211 GTCGGAATCAAACGCGAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGA 116269 | || || || | | | ||| | | | || | || || ||||| |||||| | Sbjct 355366 CTTCGACTCGAATGGCATGC-GCAGAGAGAGGAAGGCGTCAGCCAGACCGCTGACACCCA 355308 Query 116270 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCC 116329 | || ||||| | |||| ||| || || ||||| ||| || || || Sbjct 355307 GACCGATTGGCCTGTGTCGCATGTTGCTGTTGCGAGCTTCAATCACTGGGTACTTGTTAA 355248 Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389 ||||| | | | || | || ||||| || | ||||| || || | ||| | | Sbjct 355247 CTTCGATGATCTTGTTCAAGTTGCGAGTGACTACTTGTGTGACCTCGTGCAACTTCTTGA 355188 Query 116390 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 116449 | || | | | ||| | ||| || |||| || || | || || || || | Sbjct 355187 AGTCGTAGGTCTGCTTCTGAATGTCGACGTATGTAGGCAGAGCCAGAGATGCAAGGTTGC 355128 Query 116450 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 116509 |||||| || || | | |||||||| || || || || ||||| || || || Sbjct 355127 ACACAGCTACTTCGTCAGGAGCGGTGTACTCGATGATCTCGGTGCACAAGTTGGAGCTGC 355068 Query 116510 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATAT 116569 ||| |||||||||||||| || || ||| ||| || || ||||| ||||| | Sbjct 355067 GAATTGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCTTTGTACAGCATGT 355008 Query 116570 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGC 116628 | || | || ||||| || || | || |||||| || | ||| | | || | ||| || Sbjct 355007 ACGGGTTGCCAGTCTCGGTCTGAGCCTCGAGAATGGCATACCAAATCTTCTG-GGCGCGC 354949 Query 116629 ACAGTGGCGTTGGCTCGCCCCT-CCTCC----TCGTACTTTGTGTAGAGGGCCTCAAACT 116683 | ||| ||| ||| | ||| | |||||| ||||||||| || || |||| Sbjct 354948 ATAGT--------CTCACCCTTGCCTTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACT 354897 Query 116684 CTTCACC-CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGA 116742 | || || ||| | || | || || || || | || || | || | ||| | | Sbjct 354896 CATCCCCGTACA-CATCGGCAAGGCCGGGGCACTCGTTCGGGCACATCAGTGTCCAATCA 354838 Query 116743 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 116802 | || | || |||||||||||||| || |||||||| || || |||| | || Sbjct 354837 GCGTTATCTTGCACACGCTTCATGAAGAGATCAGGGATCCACAGAGCGTAGAACAAGTCA 354778 Query 116803 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 116862 ||| ||| | || || | || || || |||| || | ||| || ||| || Sbjct 354777 CGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGGACAAGATGTCT 354718 Query 116863 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC--GACGACCAGCCTGGTT 116918 ||||||||||| || ||||| | |||| || || | || | | ||| |||||| Sbjct 354717 GCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCGGGTCGCTTGTTG-CCACCCTGGTC 354659 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 |||||||| || || ||| || || || ||||| || | || ||| | ||| ||| Sbjct 354658 GACATACCTAGCAGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTTTGATGTGCC 354599 Query 116979 ATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGC----ATACC 117032 |||||| ||| || |||||| | || | | || || ||||||| | || Sbjct 354598 ATTTGTACCCGCAATGTACGAG-CCAGTCG--CCCGA-AT--GCGATGTGCGTTGAGTCC 354545 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 || || || || || ||||| || || | | || || |||| || || || Sbjct 354544 GATGCCACCGGCGTTTTTCGAGATCATCGCACAAGTCTTCAGCGTGTCGTAAATGCCCTC 354485 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT--GGTGTA 117150 || ||| |||| | |||| |||||||| | | ||||| ||| ||||| Sbjct 354484 AATGCTGTCGTCCTTCATGTCGATCAGGAAGCATGAAGCAAGTTGTG--CTTGAGGTGTG 354427 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 117209 |||||| |||| || || || | || || |||| |||| | | |||||| | | ||| Sbjct 354426 CCAGCGCTGAACAGCGTCGGCGAAGCATGTGTGAA-ATACTTGTTGGACATGTAGTTGTA 354368 Query 117210 GGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 ||||| | | | |||||| || ||||| ||||| | | ||| ||||| | ||| Sbjct 354367 CGTCTCGATCGCCGCATCAATGTCCTCGCCGTGTATACCTACAGCGACACGCATGATCAT 354308 Query 117270 GT 117271 || Sbjct 354307 GT 354306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505152419720