Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq198 105 1e-17 seq176 91.5 2e-13 >seq198 Length=398492 Score = 105 bits (116), Expect = 1e-17 Identities = 439/681 (64%), Gaps = 9/681 (1%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGG-CGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || |||||||| |||| || | | ||| | | || | | || |||||||| Sbjct 356064 TCTTGATCGACAGTGAACTGGATGGGCGCTGA-GGCGGCCATGGTGCGGAGGTAGTACAT 356006 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || || |||| ||| | ||||||||| | | |||| || | Sbjct 356005 GCCAGTCTTGAGTCCTAGACGCCAGCCGGTGAAGTGCATGGACGTGATCTTGCCCATCGT 355946 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || || |||||| |||||||| || ||| || |||||| |||||||| ||||| | Sbjct 355945 CGGCTCCTTCATGTGGATGTTCAGCGATTGGGACTGATCGATG-AAGGCGCCACGATCGG 355887 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | ||| | ||| ||| | ||| |||||||| || ||||| ||| || || Sbjct 355886 CTGACATCTGGATGATGTTGCGCTGGCTGATCTCCCAGACAGTCTTATACAGCTCCTTGA 355827 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | | | || | || | | | || ||| ||||| || || || | | || Sbjct 355826 TCTCGTCGGGGATAT-TGGGAATGCGCTGGATAGAGCCACCATCTGCGATGATGCGGTTC 355768 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || | ||| | ||||| || || ||| | ||| |||||||| | Sbjct 355767 TTCATGTTGTCGCTCCAGAGGCCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACG 355708 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | || || || |||| ||| || | || | | | | |||| ||||| | || || || Sbjct 355707 ACTTGGAACTCGCCGGCCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTCAAAG 355648 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 ||| ||| || | ||||| | ||||| || |||||||| || || | |||||| Sbjct 355647 CACTCATTGAACCCCATGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGA 355588 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCG-CTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||| || || | | || || ||| ||| || | ||| || || | Sbjct 355587 GAGTTGCGGACGCCATGCACTGCGATCC-GCGCCTTGAGGGCTTCCCAATCCCACAAGTC 355529 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTT 204432 | ||||| |||| |||||||||||| | || | ||| || | ||| ||| Sbjct 355528 AGTGGGTGTCACACCCCACATGTCGTATTGGAGCTCGCCCTGTGAAATGGGGGAGCCAGG 355469 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATA 204492 ||| ||| ||||| | || || || || | ||| || || | || ||| | Sbjct 355468 GTAAGTCTCGTAAGGGCCAAGCTTCTCAGCGAGATCGCAAGATGCTGTCAGTGCGGCGTG 355409 Query 204493 GTACATGGTCTCAAAGATCTG 204513 ||| |||||||| |||||||| Sbjct 355408 GTAGATGGTCTCGAAGATCTG 355388 Score = 102 bits (112), Expect = 1e-16 Identities = 215/318 (68%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| |||||| ||||| | || ||| |||||||| || || || || || Sbjct 354924 TCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCCGGGGCAC 354865 Query 205121 TTTTTGGGACACATCAGAGACCACATCTGA-TCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | || || |||||||| | ||| ||| | | |||| ||| | || ||| || || || Sbjct 354864 TCGTTCGGGCACATCAGTGTCCA-ATCAGCGTTATCTTGCACACGCTTCATGAAGAGATC 354806 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 ||||||||| |||| |||| ||||| || | | | || | || ||||||| Sbjct 354805 AGGGATCCACAGAGCGTAGAACAAGTCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 354746 Query 205240 TTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGC 205299 || ||| || | | | ||||| |||||||||||||| | | | ||| | ||| Sbjct 354745 GCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAATGC 354686 Query 205300 GCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAG 205359 ||| || | |||||| ||||||||||| || | || | |||||| || || || Sbjct 354685 GCCGGGTCGCTTGTTGCCACCCTGGTCGACATACCTAGCAGTGTTGTTGAACACCCGTAG 354626 Query 205360 CATCGGCACCAGACCGTT 205377 ||| || || |||||||| Sbjct 354625 CATGGGTACGAGACCGTT 354608 >seq176 Length=738521 Score = 91.5 bits (100), Expect = 2e-13 Identities = 321/495 (65%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || |||||||| |||| | ||||| | || | | || ||||||||| Sbjct 360050 TCTTGATCAACGGTGAACTGGATGGGCGCCGAGGCAGCCATGGTACGGAGGTAGTACATG 359991 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || |||| ||| | |||||| || | | |||| || | Sbjct 359990 CCAGTCTTCAGTCCGAGACGCCAGCCGGTGAAGTGCATCGACGTGATCTTGCCCATAGTT 359931 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||| ||||| || |||||| || |||||| |||||||| |||||||| Sbjct 359930 GGCTCCTTCATGTGGATGTTGAGTGACTGGGACTGATCGATG-AAGGCGCCACGATCTGC 359872 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | ||| | ||| ||| | ||| |||||||| || |||||| ||| || || | Sbjct 359871 TGACATCTGGATGATGTTGCGCTGGCTGATCTCCCAGACAGTCTTGTACAGCTCCTTGAT 359812 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | | || | | | | | ||| || || || || || || | | || Sbjct 359811 TTCATCGGGAATGT-TGGGAATGCGCTGAATTGAACCACCATCTGCAATGATGCGGTTCT 359753 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | || | ||| | |||| || || ||| | ||| || |||| || Sbjct 359752 TCATGTTGTCACTCCAAAGACCCATGTCGACGAGGTCCTTAAGCAGCCAAGGATTGACGA 359693 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 || || ||||||| || || | || | | | | ||| ||||| | || || || Sbjct 359692 CTTGGAACTCTCCGGCCAAGACACGACGAGAGTAGATATTGCTGGTGTACGGCTCAAAGC 359633 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||| ||| | ||||| | ||||| || || ||||| ||||| | ||| | || Sbjct 359632 ACTCGTTGAAGCCCATGATCTGCGATGTGCTCGCTGTTGGCATAGGAGCAACGAGTAAGG 359573 Query 204315 AGTTGCGCACACCGT 204329 ||||||| ||||||| Sbjct 359572 AGTTGCGAACACCGT 359558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152546169520