Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq184 138 1e-27
seq228 132 5e-26
seq204 113 5e-20
seq207 107 2e-18
seq193 107 2e-18
>seq184
Length=1511567
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| || |||||||| |||||||| |||| ||||| ||||||||||||||
Sbjct 735736 CTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 735795
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| ||||| | || | | |||||||||| ||||||| ||||| |||
Sbjct 735796 AATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 735854
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || ||||| || |
Sbjct 735855 TGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 735914
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 735915 CGAAGATCTGCAT 735927
Score = 131 bits (144), Expect = 2e-25
Identities = 142/187 (76%), Gaps = 6/187 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 735964 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 736023
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || ||||||||| |||||| |||||| |
Sbjct 736024 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 736083
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| ||||| |||| |||||
Sbjct 736084 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 736140
Query 46579 AACAAAG 46585
|| |||
Sbjct 736141 GACGAAG 736147
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||||| |||| || |||||| ||||| |||||||||
Sbjct 735473 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 735532
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | |||| || | |||||| |||||||| || | ||||||||||| | ||
Sbjct 735533 AAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGG 735592
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | |||||| ||| |||||| ||| | ||| | | | |||||| ||||||||
Sbjct 735593 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 735651
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| ||||| || || || || || || ||||||||
Sbjct 735652 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699
>seq228
Length=1254254
Score = 132 bits (146), Expect = 5e-26
Identities = 146/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| ||||| || |||| ||||||||||||||||||||
Sbjct 555822 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAG 555881
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | |||||||||||| | || | | |||||| ||| ||||||| ||| | |||
Sbjct 555882 ATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCA-CGTT 555940
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 555941 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 556000
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 556001 GAAGATCTGCAT 556012
Score = 127 bits (140), Expect = 2e-24
Identities = 141/187 (75%), Gaps = 6/187 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| | || ||||||||||||||||||||
Sbjct 556049 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 556108
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | ||| | || ||| ||||| |||||| |||||| |
Sbjct 556109 GATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATT 556168
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| ||||| |||| || ||
Sbjct 556169 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTT 556225
Query 46579 AACAAAG 46585
|| |||
Sbjct 556226 TACGAAG 556232
Score = 113 bits (124), Expect = 5e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 1165061 CGCAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCG 1165002
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| ||||||||||||||||| | || | | |||||||
Sbjct 1165001 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTG 1164942
Query 46499 TC 46500
||
Sbjct 1164941 TC 1164940
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | ||||||| ||||| |||| || |||||| || || |||||||||
Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || |||| || | |||||| || ||||| || | |||||||| || | ||
Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545
| | |||||| ||| |||||| ||| | ||| | | | ||||| ||||||||
Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATTGTGTCTGATGATTCCAC 555736
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| ||||| || || || || || |||||||||||
Sbjct 555737 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
>seq204
Length=319970
Score = 113 bits (124), Expect = 5e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||| || || || | | || || |||||||| |||||||| |
Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||| | ||| | | |||||||||| |||||| |||||| |
Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| ||| ||||| || | ||||| || |||||||| || || || || |
Sbjct 81926 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 81867
Query 46584 AG 46585
||
Sbjct 81866 AG 81865
>seq207
Length=296016
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||| ||| || || | | | || || |||||||| |||||||| |
Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | ||| | | |||||||||| |||||| |||||| |
Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | |||||||| |||||||| || || || || |
Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104
Query 46584 AG 46585
||
Sbjct 213105 AG 213106
>seq193
Length=432561
Score = 107 bits (118), Expect = 2e-18
Identities = 83/99 (84%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 90621 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 90680
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||||||||||||||| | || | | |||||||||
Sbjct 90681 GATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 90719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236513516840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |