Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq184 138 1e-27 seq228 132 5e-26 seq204 113 5e-20 seq207 107 2e-18 seq193 107 2e-18 >seq184 Length=1511567 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || |||||||| |||||||| |||| ||||| |||||||||||||| Sbjct 735736 CTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 735795 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| ||||| | || | | |||||||||| ||||||| ||||| ||| Sbjct 735796 AATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 735854 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| || ||||| || | Sbjct 735855 TGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 735914 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 735915 CGAAGATCTGCAT 735927 Score = 131 bits (144), Expect = 2e-25 Identities = 142/187 (76%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || ||||| | || |||||||||||||||||||| Sbjct 735964 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 736023 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || ||||||||| |||||| |||||| | Sbjct 736024 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 736083 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| || | |||||||| ||||| |||| ||||| Sbjct 736084 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 736140 Query 46579 AACAAAG 46585 || ||| Sbjct 736141 GACGAAG 736147 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| |||| || |||||| ||||| ||||||||| Sbjct 735473 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 735532 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || | |||||| |||||||| || | ||||||||||| | || Sbjct 735533 AAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGG 735592 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | |||||| ||| |||||| ||| | ||| | | | |||||| |||||||| Sbjct 735593 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 735651 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||| ||||| || || || || || || |||||||| Sbjct 735652 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699 >seq228 Length=1254254 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| || |||| |||||||||||||||||||| Sbjct 555822 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAG 555881 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||||||| | || | | |||||| ||| ||||||| ||| | ||| Sbjct 555882 ATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGGATCTTCGACTTCA-CGTT 555940 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || || | |||||||| ||||| || || || || || Sbjct 555941 GTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 556000 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 556001 GAAGATCTGCAT 556012 Score = 127 bits (140), Expect = 2e-24 Identities = 141/187 (75%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || |||||||||||||||||||| Sbjct 556049 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 556108 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | ||| | || ||| ||||| |||||| |||||| | Sbjct 556109 GATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATT 556168 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| || | |||||||| ||||| |||| || || Sbjct 556169 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTT 556225 Query 46579 AACAAAG 46585 || ||| Sbjct 556226 TACGAAG 556232 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||| ||||| ||||||||||| || ||||| || Sbjct 1165061 CGCAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCG 1165002 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| ||||||||||||||||| | || | | ||||||| Sbjct 1165001 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTG 1164942 Query 46499 TC 46500 || Sbjct 1164941 TC 1164940 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | ||||||| ||||| |||| || |||||| || || ||||||||| Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || | |||||| || ||||| || | |||||||| || | || Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | | |||||| ||| |||||| ||| | ||| | | | ||||| |||||||| Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATTGTGTCTGATGATTCCAC 555736 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||| ||||| || || || || || ||||||||||| Sbjct 555737 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 >seq204 Length=319970 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || || | | || || |||||||| |||||||| | Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||| | ||| | | |||||||||| |||||| |||||| | Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| ||| ||||| || | ||||| || |||||||| || || || || | Sbjct 81926 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 81867 Query 46584 AG 46585 || Sbjct 81866 AG 81865 >seq207 Length=296016 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| ||| || || | | | || || |||||||| |||||||| | Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | ||| | | |||||||||| |||||| |||||| | Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| |||||||| || || || || | Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104 Query 46584 AG 46585 || Sbjct 213105 AG 213106 >seq193 Length=432561 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 90621 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 90680 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||||||||| | || | | ||||||||| Sbjct 90681 GATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 90719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236513516840